November 2007 Archives by subject

• Messages sorted by: [ thread ] [ author ] [ date ]
• More info on this list...

Starting: Thu Nov 1 10:51:57 EDT 2007
Ending: Fri Nov 30 11:00:57 EST 2007
Messages: 129

• [Bioperl-guts-l] [Bug 2074] bioperl-ext: make test fails using io_lib v. 1.9 or higher   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2119] Incomplete tempfile removal using RemoteBlast   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2329] Enhancement to Bio::SeqIO::abi - abi_with_trace   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2333] Add iterations to blastxml   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2333] Add iterations to blastxml   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2356] Bio::TreeIO::pag outputs   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2388] Incorrect parsing of wu-blast report when echofilter option (of wu-blast) is used   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2388] Incorrect parsing of wu-blast report when echofilter option (of wu-blast) is used   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2391] query method does not return entire description in GenericHit   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2391] query method does not return entire description in GenericHit   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2391] query method does not return entire description in GenericHit   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2392] Bio::Tools::Geneid - unable to parse target id using _target_id   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2392] Bio::Tools::Geneid - unable to parse target id using _target_id   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2392] New: Bio::Tools::Geneid - unable to parse target id using _target_id   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2398] Bio::DB::Flat:BinarySearch too many open file handles   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2398] Bio::DB::Flat:BinarySearch too many open file handles   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2398] Bio::DB::Flat:BinarySearch too many open file handles   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2398] Bio::DB::Flat:BinarySearch too many open file handles   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2398] New: Bio::DB::Flat:BinarySearch too many open file handles   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2399] BlastHSP::n gives empty values   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2399] BlastHSP::n gives empty values   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2399] BlastHSP::n gives empty values   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2399] BlastHSP::n gives empty values   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2399] New: BlastHSP::n gives empty values   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2406] Evidence annotation reader for swiss format   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2406] Evidence annotation reader for swiss format   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2406] Evidence annotation reader for swiss format   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2406] Evidence annotation reader for swiss format   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2406] Evidence annotation reader for swiss format   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2406] New: Evidence annotation reader for swiss format   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2409] New: SeachIO Blast: raw score is bit score   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2409] SeachIO Blast: raw score is bit score   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2409] SeachIO Blast: raw score is bit score   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2409] SeachIO Blast: raw score is bit score   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2409] SeachIO Blast: raw score is bit score   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2413] New: save_tempfiles() not working in Bio::Tools::Run::WrapperBase   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2413] save_tempfiles() not working in Bio::Tools::Run::WrapperBase   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2413] save_tempfiles() not working in Bio::Tools::Run::WrapperBase   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-ext/Bio/SeqIO/staden read.pm, 1.16, 1.17 Makefile.PL, 1.6, 1.7   Christopher John Fields
• [Bioperl-guts-l] bioperl-ext/Bio/SeqIO/staden read.pm,1.15,1.16   Christopher John Fields
• [Bioperl-guts-l] bioperl-live Build.PL,1.24,1.25   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio PhyloNetwork.pm,NONE,1.1   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio SearchIO.pm,1.44,1.45   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio SeqFeatureI.pm,1.73,1.73.2.1   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio SeqFeatureI.pm,1.73,1.74   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio SimpleAlign.pm,1.142,1.143   Albert Vilella
• [Bioperl-guts-l] bioperl-live/Bio SimpleAlign.pm,1.143,1.144   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/AlignIO nexus.pm,1.31,1.32   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/DB/Flat BinarySearch.pm, 1.29, 1.30   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature Store.pm, 1.32, 1.33   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature/Store berkeleydb.pm, 1.16, 1.17   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature/Store GFF3Loader.pm, 1.27, 1.28   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature/Store/DBI mysql.pm, 1.34, 1.35   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Graphics FeatureBase.pm, 1.33, 1.33.2.1   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Graphics FeatureBase.pm, 1.33, 1.34   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Graphics FeatureBase.pm, 1.34, 1.35   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Graphics Glyph.pm,1.138,1.139   Scott Cain
• [Bioperl-guts-l] bioperl-live/Bio/Graphics/Glyph gene.pm, 1.10, 1.11   Sheldon Mckay
• [Bioperl-guts-l] bioperl-live/Bio/PhyloNetwork - New directory   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/PhyloNetwork Factory.pm, NONE, 1.1 FactoryX.pm, NONE, 1.1 GraphViz.pm, NONE, 1.1 RandomFactory.pm, NONE, 1.1 TreeFactory.pm, NONE, 1.1 TreeFactoryMulti.pm, NONE, 1.1 TreeFactoryX.pm, NONE, 1.1 muVector.pm, NONE, 1.1   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Search/Hit GenericHit.pm, 1.44, 1.45   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Search/Hit GenericHit.pm, 1.45, 1.46   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Search/HSP GenericHSP.pm, 1.78, 1.79 BlastHSP.pm, 1.36, 1.37   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Search/HSP GenericHSP.pm, 1.79, 1.80   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Search/Result GenericResult.pm, 1.30, 1.31   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO SearchResultEventBuilder.pm, 1.47, 1.48   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO blast.pm,1.119,1.120   Dave Messina
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO blast.pm,1.120,1.121   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO blast.pm,1.121,1.122   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO blast.pm,1.122,1.123   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO blast.pm,1.123,1.124   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO blast.pm,1.124,1.125   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO blastxml.pm,1.49,1.50   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO blastxml.pm,1.50,1.51   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO/XML BlastHandler.pm, 1.5, 1.6   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO/XML BlastHandler.pm, 1.6, 1.7   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO/XML PsiBlastHandler.pm, NONE, 1.1   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Seq Quality.pm,1.12,1.13   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/SeqFeature Annotated.pm, 1.42, 1.43   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/SeqFeature Slim.pm, 1.1.2.1, 1.1.2.2   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/SeqFeature Slim.pm, 1.1.2.2, 1.1.2.3   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/SeqFeature Slim.pm, 1.1.2.3, 1.1.2.4   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/SeqFeature Slim.pm,NONE,1.1.2.1   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO abi.pm,1.16,1.17   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO qual.pm,1.35,1.36   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO qual.pm,1.36,1.37   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO qual.pm,1.37,1.38   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO swiss.pm,1.109,1.110   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Tools Geneid.pm,1.7,1.8   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Tools GFF.pm,1.68,1.68.2.1   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Tools GFF.pm,1.68.2.1,1.68.2.2   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Tools GFF.pm,1.68.2.2,1.68.2.3   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Tools Glimmer.pm,1.12,1.13   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Phylo PAML.pm,1.55,1.56   Jason Stajich
• [Bioperl-guts-l] bioperl-live/examples/quality - New directory   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/examples/quality svgtrace.pl, 1.1, 1.2   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/examples/quality svgtrace.pl, NONE, 1.1   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t abi.t,1.8,1.9   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t PAML.t,1.30,1.31   Jason Stajich
• [Bioperl-guts-l] bioperl-live/t PhyloNetwork.t, NONE, 1.1 PhyloNetwork_Factory.t, NONE, 1.1 PhyloNetwork_GraphViz.t, NONE, 1.1 PhyloNetwork_RandomFactory.t, NONE, 1.1 PhyloNetwork_TreeFactory.t, NONE, 1.1 PhyloNetwork_muVector.t, NONE, 1.1   Jason Stajich
• [Bioperl-guts-l] bioperl-live/t PopGen.t,1.31,1.32   Jason Stajich
• [Bioperl-guts-l] bioperl-live/t SearchIO.t,1.120,1.121   Dave Messina
• [Bioperl-guts-l] bioperl-live/t SearchIO.t,1.121,1.122   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t SearchIO.t,1.122,1.123   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t SearchIO.t,1.123,1.124   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t SearchIO.t,1.124,1.125   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t SearchIO.t,1.125,1.126   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t SeqFeature_Slim.t,1.1.2.1,1.1.2.2   Jason Stajich
• [Bioperl-guts-l] bioperl-live/t SeqFeature_Slim.t,NONE,1.1.2.1   Jason Stajich
• [Bioperl-guts-l] bioperl-live/t swiss.t,1.10,1.11   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t/data bug2391.megablast,NONE,1.1   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t/data bug2399.tblastn,NONE,1.1   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t/data codeml4.mlc,NONE,1.1   Jason Stajich
• [Bioperl-guts-l] bioperl-live/t/data echofilter.wublastn,NONE,1.1   Dave Messina
• [Bioperl-guts-l] bioperl-live/t/data psiblast.xml,NONE,1.1   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t/data roa1.swiss,1.2,1.3   Christopher John Fields
• [Bioperl-guts-l] bioperl-run/Bio/Installer Hyphy.pm,NONE,1.1   Albert Vilella
• [Bioperl-guts-l] bioperl-run/Bio/Installer PAML.pm,1.7,1.8   Albert Vilella
• [Bioperl-guts-l] bioperl-run/Bio/Installer TCoffee.pm,1.5,1.6   Albert Vilella
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run Mdust.pm,1.9,1.10   Donald Jackson
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run TigrAssembler.pm, NONE, 1.1   Florent E Angly
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo/PAML Codeml.pm, 1.48, 1.49   Jason Stajich
• [Bioperl-guts-l] bioperl-run/scripts bioperl_application_installer.PLS, 1.2, 1.3   Albert Vilella
• [Bioperl-guts-l] bioperl-run/t Mdust.t,1.3,1.4   Donald Jackson
• [Bioperl-guts-l] bioperl-run/t PAML.t,1.15,1.16   Jason Stajich
• [Bioperl-guts-l] bioperl-run/t Probcons.t,1.6,1.7   Albert Vilella
• [Bioperl-guts-l] bioperl-run/t TigrAssembler.t,NONE,1.1   Florent E Angly
• [Bioperl-guts-l] bioperl-run/t/data NM_002254.tfa,NONE,1.1   Donald Jackson
• [Bioperl-guts-l] bioperl-run/t/data sample_dataset_1.fa,NONE,1.1   Florent E Angly

Last message date: Fri Nov 30 11:00:57 EST 2007
Archived on: Fri Nov 30 11:00:59 EST 2007

• Messages sorted by: [ thread ] [ author ] [ date ]
• More info on this list...