[Bioperl-guts-l] [Bug 2074] bioperl-ext: make test fails using io_lib v. 1.9 or higher

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Tue Oct 23 17:54:41 EDT 2007


http://bugzilla.open-bio.org/show_bug.cgi?id=2074





------- Comment #17 from cjfields at uiuc.edu  2007-10-23 17:54 EST -------
There was no XSUB declared in the last patch for read_staden_graph.  I added a
quick one in (the args are exactly the same as for staden_read_trace(), so it
is a copy-paste job).  So far everything works, though I did get a warning on
make:

read.xs: In function 'staden_read_graph':
read.xs:200: warning: passing argument 2 of 'Perl_newRV' from incompatible
pointer type
read.xs:201: warning: passing argument 2 of 'Perl_newRV' from incompatible
pointer type
read.xs:202: warning: passing argument 2 of 'Perl_newRV' from incompatible
pointer type
read.xs:203: warning: passing argument 2 of 'Perl_newRV' from incompatible
pointer type
read.xs:204: warning: passing argument 2 of 'Perl_newRV' from incompatible
pointer type
Running Mkbootstrap for Bio::SeqIO::staden::read ()

Running the test script in bug 2329 works, though we might want to delve into
the above warning some more.


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