[Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo/PAML Codeml.pm, 1.47, 1.48

Jason Stajich jason at dev.open-bio.org
Mon Oct 29 16:00:02 EDT 2007


Update of /home/repository/bioperl/bioperl-run/Bio/Tools/Run/Phylo/PAML
In directory dev.open-bio.org:/tmp/cvs-serv21521/Bio/Tools/Run/Phylo/PAML

Modified Files:
	Codeml.pm 
Log Message:
default should be mlc for codeml

Index: Codeml.pm
===================================================================
RCS file: /home/repository/bioperl/bioperl-run/Bio/Tools/Run/Phylo/PAML/Codeml.pm,v
retrieving revision 1.47
retrieving revision 1.48
diff -C2 -d -r1.47 -r1.48
*** Codeml.pm	26 Oct 2007 10:36:23 -0000	1.47
--- Codeml.pm	29 Oct 2007 19:59:59 -0000	1.48
***************
*** 821,825 ****
      }
      unless (defined $self->{'_codemlparams'}->{'outfile'}) {
!         $self->{'_codemlparams'}->{'outfile'} = 'mlb';
      }
      return $self->{'_codemlparams'}->{'outfile'};    
--- 821,825 ----
      }
      unless (defined $self->{'_codemlparams'}->{'outfile'}) {
!         $self->{'_codemlparams'}->{'outfile'} = 'mlc';
      }
      return $self->{'_codemlparams'}->{'outfile'};    



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