[Bioperl-guts-l] [Bug 2476] "Undefined sub-sequence" when processing tblastx output

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Sun Dec 7 00:30:25 EST 2008


http://bugzilla.open-bio.org/show_bug.cgi?id=2476





------- Comment #21 from cjfields at bioperl.org  2008-12-07 00:30 EST -------
(In reply to comment #20)
> Created an attachment (id=1131)
 --> (http://bugzilla.open-bio.org/attachment.cgi?id=1131&action=view) [details]
> full ./Build test report (no networking, other optional doodads)
> 
> My test, not a full run.

Mark, I'm looking at your patches next to see if they can be incorporated in
1.6 or a later 1.6 point release.  I had to modify the last two patches
slightly (been quite a few changes on main trunk, particularly re: tests and
HSPI/LocatableSeq) but they appear to pass all tests.  That's contrary to what
you are seeing, so it needs further investigating.  Appears good though!


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