[Bioperl-guts-l] [Bug 2476] "Undefined sub-sequence" when processing tblastx output

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Wed Dec 10 10:05:45 EST 2008


------- Comment #27 from maj at fortinbras.us  2008-12-10 10:05 EST -------
Oh yeah- I added a change in new() that allows the automatic calculation of the
frameshift hash based on a parse of the sequence string. If frameshifts are set
at construction, it leaves it alone. Up to you to include, but this patch does
count on it for subseq(). It's no big deal to work around, if this new()
behavior is undesirable. 

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