[Bioperl-guts-l] [15220] bioperl-live/trunk/t/Tools/Run/StandAloneBlast.t: remove BPlite tests completely

Christopher John Fields cjfields at dev.open-bio.org
Sat Dec 20 14:02:29 EST 2008


Revision: 15220
Author:   cjfields
Date:     2008-12-20 14:02:29 -0500 (Sat, 20 Dec 2008)

Log Message:
-----------
remove BPlite tests completely

Modified Paths:
--------------
    bioperl-live/trunk/t/Tools/Run/StandAloneBlast.t

Modified: bioperl-live/trunk/t/Tools/Run/StandAloneBlast.t
===================================================================
--- bioperl-live/trunk/t/Tools/Run/StandAloneBlast.t	2008-12-20 19:01:07 UTC (rev 15219)
+++ bioperl-live/trunk/t/Tools/Run/StandAloneBlast.t	2008-12-20 19:02:29 UTC (rev 15220)
@@ -152,12 +152,6 @@
 		$seq3 = $str->next_seq();
 		$seq4 = $str->next_seq();
 		
-		#*** no longer testing BPlite since deprecated, blast_pull doesn't support bl2seq yet
-		#$factory->_READMETHOD('BPlite');
-		#my $bl2seq_report = $factory->bl2seq($seq3, $seq4);
-		#$hsp = $bl2seq_report->next_feature;
-		#is $hsp->hit->start, $testresults[$testcount], "creating/parsing BPlite bl2seq report object";
-		
 		$factory->_READMETHOD('Blast');
 		my $bl2seq_report = $factory->bl2seq($seq3, $seq4);
 		$hsp = $bl2seq_report->next_result->next_hit->next_hsp;
@@ -186,8 +180,5 @@
 		$new_iter = $factory->j();
 		is $new_iter, $iter, "set blast parameter";
 		
-		#*** no longer testing BPlite since deprecated, blast_pull doesn't support iterations yet
-		#$blast_report = $factory->blastpgp($seq3);
-		#is $blast_report->number_of_iterations, $testresults[$testcount];
 	}
 }




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