[Bioperl-guts-l] [15220] bioperl-live/trunk/t/Tools/Run/StandAloneBlast.t: remove BPlite tests completely
Christopher John Fields
cjfields at dev.open-bio.org
Sat Dec 20 14:02:29 EST 2008
Revision: 15220
Author: cjfields
Date: 2008-12-20 14:02:29 -0500 (Sat, 20 Dec 2008)
Log Message:
-----------
remove BPlite tests completely
Modified Paths:
--------------
bioperl-live/trunk/t/Tools/Run/StandAloneBlast.t
Modified: bioperl-live/trunk/t/Tools/Run/StandAloneBlast.t
===================================================================
--- bioperl-live/trunk/t/Tools/Run/StandAloneBlast.t 2008-12-20 19:01:07 UTC (rev 15219)
+++ bioperl-live/trunk/t/Tools/Run/StandAloneBlast.t 2008-12-20 19:02:29 UTC (rev 15220)
@@ -152,12 +152,6 @@
$seq3 = $str->next_seq();
$seq4 = $str->next_seq();
- #*** no longer testing BPlite since deprecated, blast_pull doesn't support bl2seq yet
- #$factory->_READMETHOD('BPlite');
- #my $bl2seq_report = $factory->bl2seq($seq3, $seq4);
- #$hsp = $bl2seq_report->next_feature;
- #is $hsp->hit->start, $testresults[$testcount], "creating/parsing BPlite bl2seq report object";
-
$factory->_READMETHOD('Blast');
my $bl2seq_report = $factory->bl2seq($seq3, $seq4);
$hsp = $bl2seq_report->next_result->next_hit->next_hsp;
@@ -186,8 +180,5 @@
$new_iter = $factory->j();
is $new_iter, $iter, "set blast parameter";
- #*** no longer testing BPlite since deprecated, blast_pull doesn't support iterations yet
- #$blast_report = $factory->blastpgp($seq3);
- #is $blast_report->number_of_iterations, $testresults[$testcount];
}
}
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