[Bioperl-guts-l] [Bug 2445] New: Bio::SearchIO BLAST parser gets wrong score and evalue
bugzilla-daemon at portal.open-bio.org
bugzilla-daemon at portal.open-bio.org
Tue Feb 5 12:54:34 EST 2008
http://bugzilla.open-bio.org/show_bug.cgi?id=2445
Summary: Bio::SearchIO BLAST parser gets wrong score and evalue
Product: BioPerl
Version: unspecified
Platform: PC
OS/Version: Linux
Status: NEW
Severity: normal
Priority: P2
Component: Bio::Search/Bio::SearchIO
AssignedTo: bioperl-guts-l at bioperl.org
ReportedBy: bernd at bio.vu.nl
For large BLAST reports with E-values > 10 SearchIO gets strange score/evalues
for the hits.
E.g. hit name, score, and signifance for attached report:
gb|ABY47600.1| ... 27.7
where the description line is:
gb|ABY47600.1| apolipoprotein A-I [Gobiocypris rarus] 33.9
15
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