[Bioperl-guts-l] [Bug 2445] New: Bio::SearchIO BLAST parser gets wrong score and evalue

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Tue Feb 5 12:54:34 EST 2008


http://bugzilla.open-bio.org/show_bug.cgi?id=2445

           Summary: Bio::SearchIO BLAST parser gets wrong score and evalue
           Product: BioPerl
           Version: unspecified
          Platform: PC
        OS/Version: Linux
            Status: NEW
          Severity: normal
          Priority: P2
         Component: Bio::Search/Bio::SearchIO
        AssignedTo: bioperl-guts-l at bioperl.org
        ReportedBy: bernd at bio.vu.nl


For large BLAST reports with E-values > 10 SearchIO gets strange score/evalues
for the hits.

E.g. hit name, score, and signifance for attached report:
gb|ABY47600.1|  ...     27.7
where the description line is:
gb|ABY47600.1|  apolipoprotein A-I [Gobiocypris rarus]             33.9      
15


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