[Bioperl-guts-l] [Bug 2431] BLAST HTMLWriter makes empty lines

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Tue Jan 8 09:09:17 EST 2008


http://bugzilla.open-bio.org/show_bug.cgi?id=2431





------- Comment #3 from bernd at bio.vu.nl  2008-01-08 09:09 EST -------
Created an attachment (id=844)
 --> (http://bugzilla.open-bio.org/attachment.cgi?id=844&action=view)
test BLAST input for writer.pl

See e.g. entry "BAE86877.1" in the HTML output:

<pre>Query: 1   MSVNSNAYDAGIMGLKGKDFADQFFADENQVVHESDTVVLVLKKSDEINTFIEEILLTDY 60
           MS++SNAY AGIM   GK+FAD++FA+ENQVVHES+ VVLVLKKSDEIN  ++EILL D  
Sbjct: 1   MSLSSNAYGAGIMAKSGKEFADEYFAEENQVVHESNEVVLVLKKSDEINIIVDEILLGD- 59


Query: 61  KKNVNPTVNVEDRAGYWWIKANGKIEVDCDEISELLGRQFNVYDFLVDVSSTIGRAYTLG 120
           +K+ NPT+ VEDRAGYWW+KA GKIEVDC+E+SELLGR F+VYDFLVDVSSTIGRA+TLG 
Sbjct: 60  RKDENPTLVVEDRAGYWWLKATGKIEVDCEEVSELLGRTFSVYDFLVDVSSTIGRAFTLG 119


Query: 121  120

Sbjct: 120  119


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