[Bioperl-guts-l] [Bug 2559] Out of memory (malloc error)

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2559





------- Comment #1 from jason at bioperl.org  2008-07-30 16:14 EST -------
- This can't be a SeqIO error since you are using AlignIO

Are you providing really long (chromosome size) alignments or really deep. 
600Mb alignment is pretty big by any standards -- you are probably going to
want to use a C implementation of distance matricies if you want an answer in
reasonable time.


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