[Bioperl-guts-l] [14989] bioperl-live/trunk/t/hmmer.t: remove fixed verbose flag

Christopher John Fields cjfields at dev.open-bio.org
Tue Nov 11 14:52:03 EST 2008


Revision: 14989
Author:   cjfields
Date:     2008-11-11 14:52:02 -0500 (Tue, 11 Nov 2008)

Log Message:
-----------
remove fixed verbose flag

Modified Paths:
--------------
    bioperl-live/trunk/t/hmmer.t

Modified: bioperl-live/trunk/t/hmmer.t
===================================================================
--- bioperl-live/trunk/t/hmmer.t	2008-11-11 19:45:12 UTC (rev 14988)
+++ bioperl-live/trunk/t/hmmer.t	2008-11-11 19:52:02 UTC (rev 14989)
@@ -267,7 +267,7 @@
 is($res2->number, 604);
 
 # test for bug 2632 - CS lines should get ignored without breaking the parser
-$searchio = Bio::SearchIO->new(-format => 'hmmer', -file => test_input_file('hmmpfam_cs.out'), -verbose => 1);
+$searchio = Bio::SearchIO->new(-format => 'hmmer', -file => test_input_file('hmmpfam_cs.out'));
 my $result = $searchio->next_result;
 my $hit = $result->next_hit;
 my $hsp = $hit->next_hsp;




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