[Bioperl-guts-l] [15030] bioperl-ext/trunk/Bio/Ext/Align: ext patches (courtesy Thomas Jahns )

Christopher John Fields cjfields at dev.open-bio.org
Wed Nov 26 09:51:21 EST 2008


Revision: 15030
Author:   cjfields
Date:     2008-11-26 09:51:20 -0500 (Wed, 26 Nov 2008)

Log Message:
-----------
ext patches (courtesy Thomas Jahns)

Modified Paths:
--------------
    bioperl-ext/trunk/Bio/Ext/Align/Makefile.PL
    bioperl-ext/trunk/Bio/Ext/Align/libs/dpalign.c
    bioperl-ext/trunk/Bio/Ext/Align/libs/makefile

Modified: bioperl-ext/trunk/Bio/Ext/Align/Makefile.PL
===================================================================
--- bioperl-ext/trunk/Bio/Ext/Align/Makefile.PL	2008-11-26 08:27:44 UTC (rev 15029)
+++ bioperl-ext/trunk/Bio/Ext/Align/Makefile.PL	2008-11-26 14:51:20 UTC (rev 15030)
@@ -3,7 +3,7 @@
 # the contents of the Makefile that is written.
 WriteMakefile(
     'NAME'	=> 'Bio::Ext::Align',
-    'VERSION'	=> '1.5.3',
+    'VERSION'	=> '1.6.0',
     'LIBS'	=> ['-lm'],   # e.g., '-lm' 
     'DEFINE'	=> '-DPOSIX -DNOERROR',     # e.g., '-DHAVE_SOMETHING' 
     'INC'	=> '-I./libs',     # e.g., '-I/usr/include/other'
@@ -15,7 +15,7 @@
 '
 $(MYEXTLIB): 
 	DEFINE=\'$(DEFINE)\'; CC=\'$(PERLMAINCC)\'; CFLAGS=\'$(CCFLAGS)\'; export DEFINE INC CC CFLAGS; \
-	cd libs && $(MAKE) CC=\'$(PERLMAINCC)\' CFLAGS=\'$(CCFLAGS) $(DEFINE)\' DEFINE=\'$(DEFINE)\' libsw$(LIB_EXT) -e
-
+	cd libs && $(MAKE) CC=\'$(PERLMAINCC)\' CFLAGS=\'$(CCFLAGS) $(DEFINE)\' DEFINE=\'$(DEFINE)\' libsw$(LIB_EXT) -e ; \
+    $(RANLIB) libsw$(LIB_EXT)
 ';
 }

Modified: bioperl-ext/trunk/Bio/Ext/Align/libs/dpalign.c
===================================================================
--- bioperl-ext/trunk/Bio/Ext/Align/libs/dpalign.c	2008-11-26 08:27:44 UTC (rev 15029)
+++ bioperl-ext/trunk/Bio/Ext/Align/libs/dpalign.c	2008-11-26 14:51:20 UTC (rev 15030)
@@ -300,6 +300,7 @@
     next_row:
 	;
     }
-
+	
+	free(waa);
     return score;
 }

Modified: bioperl-ext/trunk/Bio/Ext/Align/libs/makefile
===================================================================
--- bioperl-ext/trunk/Bio/Ext/Align/libs/makefile	2008-11-26 08:27:44 UTC (rev 15029)
+++ bioperl-ext/trunk/Bio/Ext/Align/libs/makefile	2008-11-26 14:51:20 UTC (rev 15030)
@@ -48,3 +48,6 @@
 
 CFLAGS = -c -O -fPIC
 CC     = cc
+
+clean:
+	rm -f $(OBJS)




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