[Bioperl-guts-l] [Bug 2975] New: Network access despite network tests skipped.

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Fri Dec 25 22:49:01 EST 2009


http://bugzilla.open-bio.org/show_bug.cgi?id=2975

           Summary: Network access despite network tests skipped.
           Product: BioPerl
           Version: 1.6 branch
          Platform: All
               URL: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=562442
        OS/Version: All
            Status: NEW
          Severity: normal
          Priority: P2
         Component: Unclassified
        AssignedTo: bioperl-guts-l at bioperl.org
        ReportedBy: charles-debian-nospam at plessy.org


Dear BioPerl developers,

in a systematic package rebuild in conditions where network is not available,
the Debian project uncovered that the following tests try to access the network
despite the network tests were disabled.

Test Summary Report
-------------------
t/SearchIO/blastxml.t                      (Wstat: 2304 Tests: 228 Failed: 1)
  Failed test:  228
  Non-zero exit status: 9
  Parse errors: Bad plan.  You planned 391 tests but ran 228.
t/SeqIO/bsml_sax.t                         (Wstat: 2304 Tests: 1 Failed: 0)
  Non-zero exit status: 9
  Parse errors: Bad plan.  You planned 15 tests but ran 1.
t/Tools/EUtilities/egquery.t               (Wstat: 2304 Tests: 1 Failed: 0)
  Non-zero exit status: 9
  Parse errors: Bad plan.  You planned 19 tests but ran 1.
t/Tools/EUtilities/einfo.t                 (Wstat: 2304 Tests: 2 Failed: 0)
  Non-zero exit status: 9
  Parse errors: Bad plan.  You planned 51 tests but ran 2.
t/Tools/EUtilities/elink_acheck.t          (Wstat: 2304 Tests: 3 Failed: 0)
  Non-zero exit status: 9
  Parse errors: Bad plan.  You planned 130 tests but ran 3.
t/Tools/EUtilities/elink_lcheck.t          (Wstat: 2304 Tests: 3 Failed: 0)
  Non-zero exit status: 9
  Parse errors: Bad plan.  You planned 64 tests but ran 3.
t/Tools/EUtilities/elink_llinks.t          (Wstat: 2304 Tests: 3 Failed: 0)
  Non-zero exit status: 9
  Parse errors: Bad plan.  You planned 86 tests but ran 3.
t/Tools/EUtilities/elink_ncheck.t          (Wstat: 2304 Tests: 3 Failed: 0)
  Non-zero exit status: 9
  Parse errors: Bad plan.  You planned 60 tests but ran 3.
t/Tools/EUtilities/elink_neighbor.t        (Wstat: 2304 Tests: 3 Failed: 0)
  Non-zero exit status: 9
  Parse errors: Bad plan.  You planned 63 tests but ran 3.
t/Tools/EUtilities/elink_neighbor_history.t (Wstat: 2304 Tests: 3 Failed: 0)
  Non-zero exit status: 9
  Parse errors: Bad plan.  You planned 65 tests but ran 3.
t/Tools/EUtilities/elink_scores.t          (Wstat: 2304 Tests: 3 Failed: 0)
  Non-zero exit status: 9
  Parse errors: Bad plan.  You planned 58 tests but ran 3.
t/Tools/EUtilities/epost.t                 (Wstat: 2304 Tests: 6 Failed: 0)
  Non-zero exit status: 9
  Parse errors: Bad plan.  You planned 17 tests but ran 6.
t/Tools/EUtilities/esearch.t               (Wstat: 2304 Tests: 2 Failed: 0)
  Non-zero exit status: 9
  Parse errors: Bad plan.  You planned 33 tests but ran 2.
t/Tools/EUtilities/espell.t                (Wstat: 512 Tests: 2 Failed: 0)
  Non-zero exit status: 2
  Parse errors: Bad plan.  You planned 22 tests but ran 2.
t/Tools/EUtilities/esummary.t              (Wstat: 2304 Tests: 3 Failed: 0)
  Non-zero exit status: 9
  Parse errors: Bad plan.  You planned 83 tests but ran 3.
Files=329, Tests=19188, 292 wallclock secs ( 2.81 usr  0.87 sys + 107.29 cusr 
8.63 csys = 119.60 CPU)
Result: FAIL

You can find the full build log in the following page:
http://people.debian.org/~lucas/logs/2009/12/23/bioperl_1.6.1-1_lsid64.buildlog

Best regards, and have nice end of year celebrations !

-- 
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan


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