[Bioperl-guts-l] [15358] bioperl-run/trunk/DEPENDENCIES: Add DEPENDENCIES file.
Christopher John Fields
cjfields at dev.open-bio.org
Tue Jan 13 00:13:26 EST 2009
Revision: 15358
Author: cjfields
Date: 2009-01-13 00:13:26 -0500 (Tue, 13 Jan 2009)
Log Message:
-----------
Add DEPENDENCIES file.
Added Paths:
-----------
bioperl-run/trunk/DEPENDENCIES
Added: bioperl-run/trunk/DEPENDENCIES
===================================================================
--- bioperl-run/trunk/DEPENDENCIES (rev 0)
+++ bioperl-run/trunk/DEPENDENCIES 2009-01-13 05:13:26 UTC (rev 15358)
@@ -0,0 +1,85 @@
+BioPerl-run Dependencies
+
+NOTE : This file was auto-generated by the core helper script
+maintenance/dependencies.pl. Do not edit directly!
+
+The following packages are used by BioPerl. While not all are required for
+BioPerl to operate properly, some functionality will be missing without them.
+You can easily choose to install all of these during the normal installation
+process. Note that the PPM version of the BioPerl packages always tries to
+install all dependencies.
+
+The DBD::mysql, DB_File and XML::Parser modules require other applications or
+databases: MySQL, Berkeley DB, and expat respectively.
+
+NB: This list of packages is not authoritative. See the 'requires',
+'build_requires' and 'recommends' sections of Build.PL instead.
+
+ ==============================================================================
+| Distribution | Module used - Description | Min. ver. |
+|---------------------------+--------------------------------------+-----------|
+| IO-String | * IO::String - IO::File interface | None |
+| | for in-core strings | |
+|==============================================================================|
+| Used by: |
+|------------------------------------------------------------------------------|
+| * Bio::Tools::Run::Phylo::Phylip::Consense - IO::String |
+ ==============================================================================
+ ==============================================================================
+| Distribution | Module used - Description | Min. ver. |
+|---------------------------+--------------------------------------+-----------|
+| IPC-Run | * IPC::Run - Child procs w/ piping, | None |
+| | redir and psuedo-ttys | |
+|==============================================================================|
+| Used by: |
+|------------------------------------------------------------------------------|
+| * Bio::Tools::Run::Genemark - IPC::Run |
+| * Bio::Tools::Run::Glimmer - IPC::Run |
+| * Bio::Tools::Run::TigrAssembler - IPC::Run |
+| * Bio::Tools::Run::tRNAscanSE - IPC::Run |
+ ==============================================================================
+ ==============================================================================
+| Distribution | Module used - Description | Min. ver. |
+|---------------------------+--------------------------------------+-----------|
+| XML-Twig | * XML::Twig - A module for easy | None |
+| | processing of XML | |
+|==============================================================================|
+| Used by: |
+|------------------------------------------------------------------------------|
+| * Bio::Tools::Run::EMBOSSacd - XML::Twig |
+ ==============================================================================
+ ==============================================================================
+| Distribution | Module used - Description | Min. ver. |
+|---------------------------+--------------------------------------+-----------|
+| bioperl | * Bio::Seq - NA | None |
+|==============================================================================|
+| Used by: |
+|------------------------------------------------------------------------------|
+| * Bio::Tools::Run::Cap3 - Bio::Seq |
+| * Bio::Tools::Run::Genscan - Bio::Seq |
+| * Bio::Tools::Run::TribeMCL - Bio::Seq |
+| * Bio::Tools::Run::Vista - Bio::Seq |
+| * Bio::Tools::Run::Alignment::Amap - Bio::Seq |
+| * Bio::Tools::Run::Alignment::Clustalw - Bio::Seq |
+| * Bio::Tools::Run::Alignment::Kalign - Bio::Seq |
+| * Bio::Tools::Run::Alignment::Lagan - Bio::Seq |
+| * Bio::Tools::Run::Alignment::MAFFT - Bio::Seq |
+| * Bio::Tools::Run::Alignment::Muscle - Bio::Seq |
+| * Bio::Tools::Run::Alignment::Probalign - Bio::Seq |
+| * Bio::Tools::Run::Alignment::Probcons - Bio::Seq |
+| * Bio::Tools::Run::Alignment::Proda - Bio::Seq |
+| * Bio::Tools::Run::Alignment::StandAloneFasta - Bio::Seq |
+| * Bio::Tools::Run::Alignment::TCoffee - Bio::Seq |
+ ==============================================================================
+ ==============================================================================
+| Distribution | Module used - Description | Min. ver. |
+|---------------------------+--------------------------------------+-----------|
+| libwww-perl | * HTTP::Request::Common - Functions | None |
+| | that generate HTTP::Requests | |
+| | * LWP - Libwww-perl | |
+|==============================================================================|
+| Used by: |
+|------------------------------------------------------------------------------|
+| * Bio::Installer::Generic - HTTP::Request::Common |
+| * Bio::Installer::Generic - LWP |
+ ==============================================================================
Property changes on: bioperl-run/trunk/DEPENDENCIES
___________________________________________________________________
Name: svn:mime-type
+ text/plain
Name: svn:keywords
+ Author Date Id Rev URL
Name: svn:eol-style
+ native
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