[Bioperl-guts-l] [15360] bioperl-run/trunk: * small updates

Christopher John Fields cjfields at dev.open-bio.org
Tue Jan 13 08:44:56 EST 2009

Revision: 15360
Author:   cjfields
Date:     2009-01-13 08:44:56 -0500 (Tue, 13 Jan 2009)

Log Message:
* small updates

Modified Paths:

Modified: bioperl-run/trunk/Changes
--- bioperl-run/trunk/Changes	2009-01-13 13:44:13 UTC (rev 15359)
+++ bioperl-run/trunk/Changes	2009-01-13 13:44:56 UTC (rev 15360)
@@ -4,12 +4,18 @@
 Full details of changes between all versions are available online at:
+1.6.0 Release
+   o All Pise and Pise-related modules and scripts have been moved to the
+     new bioperl-pise repository. The Pise service is no longer available and
+     has been replaced by Mobyle.  They have been retained as one can still
+     install a Pise server, and as these modules can possibly be used to create
+     a new BioPerl API for Mobyle.
 1.5.2 Release in sync with bioperl core
    o Several wrappers updated for newer versions of the programs.
 1.5.1 Release in sync with bioperl core
    o First major release in a while, so lots of things in this release

Modified: bioperl-run/trunk/DEPENDENCIES
--- bioperl-run/trunk/DEPENDENCIES	2009-01-13 13:44:13 UTC (rev 15359)
+++ bioperl-run/trunk/DEPENDENCIES	2009-01-13 13:44:56 UTC (rev 15360)
@@ -9,9 +9,6 @@
 process. Note that the PPM version of the BioPerl packages always tries to
 install all dependencies.
-The DBD::mysql, DB_File and XML::Parser modules require other applications or
-databases: MySQL, Berkeley DB, and expat respectively.
 NB: This list of packages is not authoritative. See the 'requires',
 'build_requires' and 'recommends' sections of Build.PL instead.

Modified: bioperl-run/trunk/INSTALL
--- bioperl-run/trunk/INSTALL	2009-01-13 13:44:13 UTC (rev 15359)
+++ bioperl-run/trunk/INSTALL	2009-01-13 13:44:56 UTC (rev 15360)
@@ -2,11 +2,10 @@
 bioperl-run INSTALLATION
 You need at least the corresponding version of Bioperl. Since this
-is bioperl-run 1.5.2, you will need bioperl 1.5.2.
+is BioPerl-run 1.6, you will need BioPerl 1.6.
@@ -31,11 +30,11 @@
   cpan>d /bioperl-run/
   Database was generated on Mon, 20 Nov 2006 05:24:36 GMT
-  Distribution S/SE/SENDU/bioperl-run-1.5.2_100.tar.gz
+  Distribution C/CJ/CJFIELDS/BioPerl-run-1.5.9_1.tar.gz
 Now install:
- cpan>install S/SE/SENDU/bioperl-run-1.5.2_100.tar.gz
+ cpan>install C/CJ/CJFIELDS/BioPerl-run-1.5.9_1.tar.gz
 If you've installed everything perfectly then you may pass all the tests
 run in the './Build test' phase.
@@ -47,12 +46,11 @@
 If you decide that the failed tests will not affect how you intend to use
 bioperl-run and you'd like to install anyway do:
- cpan>force install S/SE/SENDU/bioperl-run-1.5.2_100.tar.gz
+ cpan>force install C/CJ/CJFIELDS/BioPerl-run-1.5.9_1.tar.gz
 This is what most experienced Bioperl users would do. However, if you're
 concerned about a failed test and need assistance or advice then contact
 bioperl-l at bioperl.org.
@@ -77,7 +75,6 @@
 NOTE: many tests will be skipped without the necessary environment
 variables set to tell Bioperl where your programs are installed.
 The following page on the BioPerl website has up-to-date

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