[Bioperl-guts-l] [15441] bioperl-live/branches/branch-1-6/Bio/DB/SeqFeature/Store/LoadHelper .pm: cleanup temporary files at DESTROY time rather than at process exit time

Lincoln Stein lincoln.stein at gmail.com
Fri Jan 23 08:35:40 EST 2009


Hi Chris,

It's not critical. The effect of the bug is to cause a few temporary files
to linger in /tmp when GBrowse is run in a persistent environment (e.g.
FastCGI). Nobody but me has noticed it.

I'm happy to wait until 1.6.1.

Lincoln

On Fri, Jan 23, 2009 at 8:19 AM, Chris Fields <cjfields at illinois.edu> wrote:

> Lincoln, is this one critical?  I planned on releasing 1.6.0 tomorrow, so I
> will need to tag a quick RC5 prior to the final release (RC4 is already in
> CPAN).
>
> Alternatively I could try getting any fixes in from the last few days
> (there are a few others) and have 1.6.1 out fairly quickly.
>
> chris
>
> On Jan 23, 2009, at 7:10 AM, Lincoln Stein wrote:
>
>  Revision: 15441
>> Author:   lstein
>> Date:     2009-01-23 08:10:51 -0500 (Fri, 23 Jan 2009)
>>
>> Log Message:
>> -----------
>> cleanup temporary files at DESTROY time rather than at process exit time
>>
>> Modified Paths:
>> --------------
>>   bioperl-live/branches/branch-1-6/Bio/DB/SeqFeature/Store/LoadHelper.pm
>>
>> Modified:
>> bioperl-live/branches/branch-1-6/Bio/DB/SeqFeature/Store/LoadHelper.pm
>> ===================================================================
>> --- bioperl-live/branches/branch-1-6/Bio/DB/SeqFeature/Store/LoadHelper.pm
>>   2009-01-23 03:48:23 UTC (rev 15440)
>> +++ bioperl-live/branches/branch-1-6/Bio/DB/SeqFeature/Store/LoadHelper.pm
>>   2009-01-23 13:10:51 UTC (rev 15441)
>> @@ -51,6 +51,10 @@
>>    return bless $self,$class;
>> }
>>
>> +sub DESTROY {
>> +    File::Temp::cleanup();
>> +}
>> +
>> sub create_dbs {
>>    my $self = shift;
>>    my $tmp  = shift;
>>
>>
>> _______________________________________________
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>> Bioperl-guts-l at lists.open-bio.org
>> http://lists.open-bio.org/mailman/listinfo/bioperl-guts-l
>>
>
>


-- 
Lincoln D. Stein

Ontario Institute for Cancer Research
101 College St., Suite 800
Toronto, ON, Canada M5G0A3
416 673-8514
Assistant: Renata Musa <Renata.Musa at oicr.on.ca>


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