[Bioperl-guts-l] [Bug 2855] New: Bio::Restriction::Analysis borks when cutting on certain enzymes

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Thu Jun 11 10:29:30 EDT 2009


           Summary: Bio::Restriction::Analysis borks when cutting on certain
           Product: BioPerl
           Version: 1.6 branch
          Platform: All
        OS/Version: Windows
            Status: NEW
          Severity: major
          Priority: P2
         Component: Core Components
        AssignedTo: bioperl-guts-l at bioperl.org
        ReportedBy: maj at fortinbras.us

Here is a description from Rasmus Nielsen:

"I downloaded withrefm.906 from ftp://ftp.neb.com/pub/rebase/ and created the 
script shown at the bottom of the mail.
My bioperl version is bioperl-live nightly from 09-Jun-2009.

The scripts throws an exception - see below. But, if I comment out the 
'-enzymes' argument, so it uses the built-in collection of enzymes, it works."

test script is in attachment; see further comments.

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