[Bioperl-guts-l] [Bug 2926] New: Bio:Tools::TandemRepeatsFinder cannot parse out seq_id without description present

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Wed Oct 7 12:52:55 EDT 2009


http://bugzilla.open-bio.org/show_bug.cgi?id=2926

           Summary: Bio:Tools::TandemRepeatsFinder cannot parse out seq_id
                    without description present
           Product: BioPerl
           Version: main-trunk
          Platform: PC
        OS/Version: Linux
            Status: NEW
          Severity: minor
          Priority: P4
         Component: Unclassified
        AssignedTo: bioperl-guts-l at bioperl.org
        ReportedBy: philipmabon at gmail.com


TandemRepeatsFinder will not parse out the seq_id without description being
presented in the file

If Tandem Repeat Finder was given a fasta file with no description,
Bio::Tools::TandemRepeatsFinder will not be able to parse out the sequence id.

Fix is needed to change the regular expression where the description is an
option when parsing the sequence line:
'Sequence: R20291'


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