April 2010 Archives by author

• Messages sorted by: [ thread ] [ subject ] [ date ]
• More info on this list...

Starting: Thu Apr 1 08:36:21 EDT 2010
Ending: Fri Apr 30 09:36:44 EDT 2010
Messages: 83

• [Bioperl-guts-l] [16955] bioperl-live/trunk: Partial redesign to simplify/ clarify the internal code of B::A::T::ContigSpectrum   Florent E Angly
• [Bioperl-guts-l] [16958] bioperl-live/trunk/Bio/DB/GFF/Adaptor/dbi/oracle.pm: so how long has there been a syntax error in this module   Scott Cain
• [Bioperl-guts-l] preferred route of OS X installation?   Chris Fields
• [Bioperl-guts-l] [16946] bioperl-live/trunk: [bug 2399] n() should be at least 1, but not an empty string.   Christopher John Fields
• [Bioperl-guts-l] [16947] bioperl-live/trunk/Build.PL: [bug 2975]   Christopher John Fields
• [Bioperl-guts-l] [16948] bioperl-live/trunk: Add a -string parameter, allows one to pass a string in to be converted to a filehandle.   Christopher John Fields
• [Bioperl-guts-l] [16951] bioperl-live/trunk: [bug 3031]   Christopher John Fields
• [Bioperl-guts-l] [16954] bioperl-live/trunk: [bug 3063]   Christopher John Fields
• [Bioperl-guts-l] [16956] bioperl-live/trunk: [bug 3064]   Christopher John Fields
• [Bioperl-guts-l] [16953] bioperl-live/trunk/Bio/Tools/Run/WrapperBase/CommandExts.pm: Add last_execution attribute and accessor   Dan Kortschak
• [Bioperl-guts-l] [16945] bioperl-live/trunk: Fix for bug #3040.   Dave Messina
• [Bioperl-guts-l] [16949] bioperl-run/trunk/lib/Bio/Tools/Run/Phylo/PAML/Evolver.pm: cwd call not used (and can produce error), so I'm removing it.   Dave Messina
• [Bioperl-guts-l] preferred route of OS X installation?   Dave Messina
• [Bioperl-guts-l] preferred route of OS X installation?   Dave Messina
• [Bioperl-guts-l] [16952] bioperl-live/trunk/Bio/SearchIO/fasta.pm: typo in new() docs ?\226? \128?\148?\194?\160default ID length is 6, not 7.   Dave Messina
• [Bioperl-guts-l] [16957] bioperl-live/trunk/Bio/SeqIO/fastq.pm: fix for bug #3068   Dave Messina
• [Bioperl-guts-l] [16944] bioperl-live/trunk: merged changes   Lincoln Stein
• [Bioperl-guts-l] [16950] bioperl-live/trunk/Bio/DB/SeqFeature/Store/DBI/mysql.pm: fixed performance of sequence fetching; improvement of roughly 100x   Lincoln Stein
• [Bioperl-guts-l] [Bug 3039] New: TreeIO::newick writes root node branch length incorrectly   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3039] TreeIO::newick writes root node branch length incorrectly   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3039] TreeIO::newick writes root node branch length incorrectly   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3039] TreeIO::newick writes root node branch length incorrectly   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3039] TreeIO::newick writes root node branch length incorrectly   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3040] New: PAML parser fails on codeml output with 'nan'   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3040] PAML parser fails on codeml output with 'nan'   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3041] New: BioPerl breaks listing of updateable modules in a CPAN shell   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3041] BioPerl breaks listing of updateable modules in a CPAN shell   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3041] BioPerl breaks listing of updateable modules in a CPAN shell   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3041] BioPerl breaks listing of updateable modules in a CPAN shell   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2399] BlastHSP::n gives empty values   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2955] Bio::DB::Refseq   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2956] ranges in EMBL output   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2960] HOWTO:EUtilities_Cookbook   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2975] Network access despite network tests skipped.   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3049] New: incorrect formatting of LOCUS line in genbank output   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3050] New: incorrect formatting of LOCUS line in genbank output   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3051] New: incorrect formatting of LOCUS line in genbank output   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3052] New: incorrect formatting of LOCUS line in genbank output   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3053] New: incorrect formatting of LOCUS line in genbank output   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3053] incorrect formatting of LOCUS line in genbank output   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3049] incorrect formatting of LOCUS line in genbank output   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3050] incorrect formatting of LOCUS line in genbank output   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3053] incorrect formatting of LOCUS line in genbank output   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3051] incorrect formatting of LOCUS line in genbank output   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3053] incorrect formatting of LOCUS line in genbank output   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3052] incorrect formatting of LOCUS line in genbank output   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3053] incorrect formatting of LOCUS line in genbank output   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3055] New: GFF3Loader with allow_whitespace(1) fails to load valid GFF3 with spaces in 9th column   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3056] New: Bio::Tools::Run::Primer3 has not updated for Primer3 versions 2 and above   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3056] Bio::Tools::Run::Primer3 has not updated for Primer3 versions 2 and above   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3058] New: Bio::SearchIO is unable to parse fasta35 output   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3058] Bio::SearchIO is unable to parse fasta35 output   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3058] Bio::SearchIO is unable to parse fasta35 output   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3058] Bio::SearchIO is unable to parse fasta35 output   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3031] Unable to parse algorithm_reference from BLAST reports using Bio::SearchIO   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3031] Unable to parse algorithm_reference from BLAST reports using Bio::SearchIO   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3031] Unable to parse algorithm_reference from BLAST reports using Bio::SearchIO   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3031] Unable to parse algorithm_reference from BLAST reports using Bio::SearchIO   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3061] New: AlignIO hash sequence storage   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3058] Bio::SearchIO is unable to parse fasta35 output   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3063] Unable to parse BLAST RID (Request ID) from BLAST reports using Bio::SearchIO   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3063] Unable to parse BLAST RID (Request ID) from BLAST reports using Bio::SearchIO   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3061] AlignIO hash sequence storage   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3063] Unable to parse BLAST RID (Request ID) from BLAST reports using Bio::SearchIO   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3064] New: unusual blastp output causes SearchIO to crash   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3064] unusual blastp output causes SearchIO to crash   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3064] unusual blastp output causes SearchIO to crash   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3064] unusual blastp output causes SearchIO to crash   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3064] unusual blastp output causes SearchIO to crash   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3064] unusual blastp output causes SearchIO to crash   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3064] unusual blastp output causes SearchIO to crash   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3064] unusual blastp output causes SearchIO to crash   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3061] AlignIO hash sequence storage   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3061] AlignIO hash sequence storage   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3065] New: Bio::FeatureIO::gff _handle_feature (BioPerl 1.6.1) doesn't cope with ; <space> delimited attributes   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3068] New: SeqIO::fastq parser fails to include single 0 with quality scores   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3068] SeqIO::fastq parser fails to include single 0 with quality scores   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3070] New: get_tiled_alns() skips first HSP   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3070] get_tiled_alns() skips first HSP   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3070] get_tiled_alns() skips first HSP   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3070] get_tiled_alns() skips first HSP   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3070] get_tiled_alns() skips first HSP   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3070] get_tiled_alns() skips first HSP   bugzilla-daemon at portal.open-bio.org

Last message date: Fri Apr 30 09:36:44 EDT 2010
Archived on: Fri Apr 30 09:36:49 EDT 2010

• Messages sorted by: [ thread ] [ subject ] [ date ]
• More info on this list...