[Bioperl-guts-l] [bioperl/Bio-FeatureIO] 467501: work on genericzing handler; all pass but gff, wit...

noreply at github.com noreply at github.com
Fri Aug 27 16:35:55 EDT 2010


Branch: refs/heads/master
Home:   http://github.com/bioperl/Bio-FeatureIO

Commit: 467501e5f97a1c9dffae72cfd810a8631313ced0
    http://github.com/bioperl/Bio-FeatureIO/commit/467501e5f97a1c9dffae72cfd810a8631313ced0
Author: Chris Fields <cjfields at bioperl.org>
Date:   2010-08-27 (Fri, 27 Aug 2010)

Changed paths:
  M lib/Bio/FeatureIO/Handler/GenericFeatureHandler.pm
  M lib/Bio/FeatureIO/gff.pm
  M lib/Bio/FeatureIO/interpro.pm
  M t/gff.t

Log Message:
-----------
work on genericzing handler; all pass but gff, with 5 failed tests


Commit: 394c99d0a8de133953c23a4285eb57d15f23c7d2
    http://github.com/bioperl/Bio-FeatureIO/commit/394c99d0a8de133953c23a4285eb57d15f23c7d2
Author: Chris Fields <cjfields at bioperl.org>
Date:   2010-08-27 (Fri, 27 Aug 2010)

Changed paths:
  M lib/Bio/FeatureIO/Handler/GenericFeatureHandler.pm

Log Message:
-----------
check mode and type for sequence; gff now passes


Commit: 9ad6069c1da1adbcb883c4be6cdec0f1cdd1d5d0
    http://github.com/bioperl/Bio-FeatureIO/commit/9ad6069c1da1adbcb883c4be6cdec0f1cdd1d5d0
Author: Chris Fields <cjfields at bioperl.org>
Date:   2010-08-27 (Fri, 27 Aug 2010)

Changed paths:
  M lib/Bio/FeatureIO/Handler/GenericFeatureHandler.pm
  M t/gff.t

Log Message:
-----------
remove debugging


Commit: 7873a227d3ab1f5b6718347280f1e7a23d07673e
    http://github.com/bioperl/Bio-FeatureIO/commit/7873a227d3ab1f5b6718347280f1e7a23d07673e
Author: Chris Fields <cjfields at bioperl.org>
Date:   2010-08-27 (Fri, 27 Aug 2010)

Changed paths:
  M lib/Bio/FeatureIO/Handler/GenericFeatureHandler.pm
  M lib/Bio/FeatureIO/gff.pm

Log Message:
-----------
simplify state checks




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