[Bioperl-guts-l] [Bug 3160] New: Bio::SearchIO::Writer::TextResultWriter does not output Algorithm and Algorithm Version information

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Fri Dec 10 12:47:31 EST 2010


http://bugzilla.open-bio.org/show_bug.cgi?id=3160

           Summary: Bio::SearchIO::Writer::TextResultWriter does not output
                    Algorithm and Algorithm Version information
           Product: BioPerl
           Version: main-trunk
          Platform: PC
        OS/Version: Windows XP
            Status: NEW
          Severity: normal
          Priority: P2
         Component: Bio::Search/Bio::SearchIO
        AssignedTo: bioperl-guts-l at bioperl.org
        ReportedBy: pcantalupo at gmail.com


The Bio::SearchIO::Writer::TextResultWriter does not start the output with the
Algorithm and Algorithm Version at the top of the Blast result. It starts with
the Reference section. This is a problem for the end user since that person
reading the output has no idea what algorithm (i.e. TBLASTX) was used to
generate the output.


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