[Bioperl-guts-l] [16709] bioperl-live/trunk/Bio/Assembly/IO/bowtie.pm: Bug fix - dum.

Dan Kortschak kortsch at dev.open-bio.org
Sun Jan 17 22:20:35 EST 2010


Revision: 16709
Author:   kortsch
Date:     2010-01-17 22:20:35 -0500 (Sun, 17 Jan 2010)
Log Message:
-----------
Bug fix - dum.

Modified Paths:
--------------
    bioperl-live/trunk/Bio/Assembly/IO/bowtie.pm

Modified: bioperl-live/trunk/Bio/Assembly/IO/bowtie.pm
===================================================================
--- bioperl-live/trunk/Bio/Assembly/IO/bowtie.pm	2010-01-17 20:50:11 UTC (rev 16708)
+++ bioperl-live/trunk/Bio/Assembly/IO/bowtie.pm	2010-01-18 03:20:35 UTC (rev 16709)
@@ -165,7 +165,7 @@
 			unless $guesser->guess =~ m/^fasta$/;
 	} elsif ($HAVE_BOWTIE) {
 		my $inspector = Bio::Tools::Run::Bowtie->new( -command => 'inspect' );
-		my $refdb = $inspector->run($index);
+		$refdb = $inspector->run($index);
 	} else {
 		$self->throw("Bio::Tools::Run::Bowtie is not available - cannot extract refdb from index.");
 	}



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