[Bioperl-guts-l] [Bug 3011] namespace support did not work properly for Bio::DB::Seqfeature::Store::DBI::Pg

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Thu Mar 4 10:34:21 EST 2010


http://bugzilla.open-bio.org/show_bug.cgi?id=3011





------- Comment #3 from awitney at sgul.ac.uk  2010-03-04 10:34 EST -------
I think the concept, i.e. to fix it for Pg was accepted as an idea. I initially
presented a way of fixing it (which Scott Cain was ok with), but once i got
into the code further I realised a better way to do it. When mentioning this on
the list I didn't really get any response.

Also I modified the database schema for Pg to use the 'text' datatype rather
than 'varchar' as is recommended by the Pg community. This is independent of
the namespace issue if you want to reverse it.

The patch works for me and is in regular use. But let me know if you need me to
do anything further for it to make it acceptable


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