[Bioperl-guts-l] [16929] bioperl-live/trunk/scripts/Bio-DB-GFF/genbank2gff3.PLS: commented out map_types() method in genbank2gff3 converter script due to type mapping bugs

Nathan Liles nml5566 at dev.open-bio.org
Wed Mar 24 18:29:39 EDT 2010


Revision: 16929
Author:   nml5566
Date:     2010-03-24 18:29:39 -0400 (Wed, 24 Mar 2010)
Log Message:
-----------
commented out map_types() method in genbank2gff3 converter script due to type mapping bugs

Modified Paths:
--------------
    bioperl-live/trunk/scripts/Bio-DB-GFF/genbank2gff3.PLS

Modified: bioperl-live/trunk/scripts/Bio-DB-GFF/genbank2gff3.PLS
===================================================================
--- bioperl-live/trunk/scripts/Bio-DB-GFF/genbank2gff3.PLS	2010-03-24 11:11:36 UTC (rev 16928)
+++ bioperl-live/trunk/scripts/Bio-DB-GFF/genbank2gff3.PLS	2010-03-24 22:29:39 UTC (rev 16929)
@@ -1033,15 +1033,15 @@
 
     # map feature types to the sequence ontology
     ## $tm->map_types_to_SO( -seq => $seq );
-    #$tm->map_types( -seq => $seq, -type_map => $FTSOmap, -undefined => "region" ); #dgg
+    $tm->map_types( -seq => $seq, -type_map => $FTSOmap, -undefined => "region" ); #dgg
 
-    map_types( 
-	    $tm, 
-	    -seq => $seq, 
-	    -type_map  => $FTSOmap, 
-	    -syn_map  => $FTSOsynonyms, 
-	    -undefined => "region" 
-    ); #nml
+    #map_types( 
+	    #$tm, 
+	    #-seq => $seq, 
+	    #-type_map  => $FTSOmap, 
+	    #-syn_map  => $FTSOsynonyms, 
+	    #-undefined => "region" 
+    #); #nml
 
 }
 



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