March 2010 Archives by date

• Messages sorted by: [ thread ] [ subject ] [ author ]
• More info on this list...

Starting: Mon Mar 1 22:54:10 EST 2010
Ending: Wed Mar 31 16:34:05 EDT 2010
Messages: 153

• [Bioperl-guts-l] [16878] bioperl-run/trunk/lib/Bio/Tools/Run/StandAloneBlastPlus.pm: make overwrite behavior work   Mark Allen Jensen
• [Bioperl-guts-l] [Bug 3017] New: use threads to get genbank file error   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [16879] bioperl-dev/trunk/Bio/Tools: way long-overdue init commit of primer3 rewrite (needs tests)   Christopher John Fields
• [Bioperl-guts-l] [16880] bioperl-dev/trunk/Bio/Tools/Primer3Redux/Result.pm: additional method to grab (so-called) persistent data   Christopher John Fields
• [Bioperl-guts-l] [16881] bioperl-dev/trunk/Bio/Tools: add Nathan Hillson as contrib   Christopher John Fields
• [Bioperl-guts-l] [16882] bioperl-run/trunk/lib/Bio/Tools/Run/StandAloneBlastPlus.pm: redundant sub   Mark Allen Jensen
• [Bioperl-guts-l] [16883] bioperl-dev/trunk: add a test case and stub for tests (not run yet)   Christopher John Fields
• [Bioperl-guts-l] [16884] bioperl-live/trunk/Bio/Search/Tiling: adding get_tiled_alns: returns an array of SimpleAligns constructed from contiguous tiled intervals   Mark Allen Jensen
• [Bioperl-guts-l] [16885] bioperl-live/trunk/Bio/Search/Tiling/MapTiling.pm: some pod   Mark Allen Jensen
• [Bioperl-guts-l] [Bug 3018] New: no homology_string or seq_inds output using Bio::SearchIO::gmap_f9   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3018] no homology_string or seq_inds output using Bio::SearchIO::gmap_f9   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3018] no homology_string or seq_inds output using Bio::SearchIO::gmap_f9   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3019] New: $hit->query_length returns no output using Bio::SearchIO::gmap_f9   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3019] $hit->query_length returns no output using Bio::SearchIO::gmap_f9   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3019] $hit->query_length returns no output using Bio::SearchIO::gmap_f9   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3020] New: GFF3Loader.pm: allow disabling creation of Alias attribute for target_id of Target attribute (patches included)   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3020] GFF3Loader.pm: allow disabling creation of Alias attribute for target_id of Target attribute (patches included)   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [16886] bioperl-run/trunk/t/EMBOSS.t: skipping wrong number of tests   Christopher John Fields
• [Bioperl-guts-l] [Bug 3021] New: query_name returns null using Bio::SearchIO::gmap_f9   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3021] query_name returns null using Bio::SearchIO::gmap_f9   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3021] query_name returns null using Bio::SearchIO::gmap_f9   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [16887] bioperl-run/trunk/lib/Bio/Tools/Run/EMBOSSacd.pm: throw error if XML::Twig borks on a parse   Christopher John Fields
• [Bioperl-guts-l] [16887] bioperl-run/trunk/lib/Bio/Tools/Run/EMBOSSacd.pm: throw error if XML::Twig borks on a parse   Jay Hannah
• [Bioperl-guts-l] [16887] bioperl-run/trunk/lib/Bio/Tools/Run/EMBOSSacd.pm: throw error if XML::Twig borks on a parse   Chris Fields
• [Bioperl-guts-l] [16888] bioperl-run/trunk: use safe_parse (deafferret++); tests now run, but fail with EMBOSS 6.2.0   Christopher John Fields
• [Bioperl-guts-l] [16889] bioperl-live/trunk/Bio/Root: add email prompt for tests requiring it   Christopher John Fields
• [Bioperl-guts-l] [16890] bioperl-live/trunk/t/RemoteDB/EUtilities.t: skip tests unless a valid email is provided (now an NCBI requirement)   Christopher John Fields
• [Bioperl-guts-l] [16891] bioperl-run/trunk/Build.PL: [bug 3002] add a bit o' code for email address prompting for tests requiring them   Christopher John Fields
• [Bioperl-guts-l] [Bug 3002] [TODO] Modify *EUtilities tests to reflect NCBI email policies   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3011] namespace support did not work properly for Bio::DB::Seqfeature::Store::DBI::Pg   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [16892] bioperl-live/trunk: [bug 3012] add a clearer to guarantee clearing the proxy, regardless how the method is called (a bit of code smell there, probably should be refactored to just be used as an instance instead of ambiguously using either class or instance calls )   Christopher John Fields
• [Bioperl-guts-l] [16893] bioperl-live/trunk/Bio/SeqFeature/Generic.pm: partially revert previous commit (mistakenly added untested SF:: Generic code to that)   Christopher John Fields
• [Bioperl-guts-l] [Bug 3012] [TODO] Bio::Root::HTTPget tests failing   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [16894] bioperl-live/trunk: [bug 3018]   Christopher John Fields
• [Bioperl-guts-l] [Bug 3018] no homology_string or seq_inds output using Bio::SearchIO::gmap_f9   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [16895] bioperl-live/trunk: [bug 3019]   Christopher John Fields
• [Bioperl-guts-l] [Bug 3019] $hit->query_length returns no output using Bio::SearchIO::gmap_f9   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [16896] bioperl-live/trunk: [bug 3121]   Christopher John Fields
• [Bioperl-guts-l] [16897] bioperl-live/trunk/t: um, that would be bug 3021, not 3121   Christopher John Fields
• [Bioperl-guts-l] [Bug 3021] query_name returns null using Bio::SearchIO::gmap_f9   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [16898] bioperl-live/trunk/Bio/DB/CUTG.pm: get non-alpha chars in names; thanks Csaba   Mark Allen Jensen
• [Bioperl-guts-l] [16899] bioperl-live/trunk: get_tiled_alns and tests   Mark Allen Jensen
• [Bioperl-guts-l] [16900] bioperl-live/trunk/Bio/Search/Tiling/MapTiling.pm: futz   Mark Allen Jensen
• [Bioperl-guts-l] [Bug 3011] namespace support did not work properly for Bio::DB::Seqfeature::Store::DBI::Pg   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [16901] bioperl-live/trunk: remote BLAST is timing out when using CDD and rpsblast   Christopher John Fields
• [Bioperl-guts-l] [16902] bioperl-live/trunk/t/Tools/Run: Add a finite number of attempts for report retrieval   Christopher John Fields
• [Bioperl-guts-l] [16903] bioperl-live/trunk: [bug 3011] patch for namespace support in SF:: Store Pg adaptor   Christopher John Fields
• [Bioperl-guts-l] [Bug 3011] namespace support did not work properly for Bio::DB::Seqfeature::Store::DBI::Pg   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [16904] bioperl-live/trunk/Bio/SeqIO/scf.pm: [bug 2858] reorder the unpacking of base and trace info (wrong); needs test confirmation   Christopher John Fields
• [Bioperl-guts-l] [Bug 2858] Trace data in Bio::SeqIO::scf appears scrambled   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [16905] bioperl-live/trunk/t/Tree/TreeIO.t: [bug 2869] TODO test for GC issue with trees (edge case)   Christopher John Fields
• [Bioperl-guts-l] [16906] bioperl-run/trunk/lib/Bio/Tools/Run/StandAloneBlastPlus.pm: alias -program_dir to -prog_dir (thanks Ben)   Mark Allen Jensen
• [Bioperl-guts-l] [16907] bioperl-run/trunk/lib/Bio/Tools/Run/StandAloneBlastPlus.pm: duh, thanks Ben   Mark Allen Jensen
• [Bioperl-guts-l] [Bug 3022] New: Regexp forget while parsing withrefm references   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3022] Regexp forget while parsing withrefm references   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [16908] bioperl-live/trunk/Bio/Restriction/IO/withrefm.pm: Fix for bug #3022.   Dave Messina
• [Bioperl-guts-l] [Bug 3022] Regexp forget while parsing withrefm references   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [16909] bioperl-live/trunk/t/Tools/Run: next, not redo   Christopher John Fields
• [Bioperl-guts-l] [16910] bioperl-live/trunk/Bio/SearchIO/gmap_f9.pm:   George Hartzell
• [Bioperl-guts-l] [16911] bioperl-live/trunk/scripts/Bio-DB-EUtilities/einfo.PLS: email for einfo   Christopher John Fields
• [Bioperl-guts-l] [16912] bioperl-live/trunk: fix remoteblast parsing ( almost complete refactor of retrieve_blast)   Christopher John Fields
• [Bioperl-guts-l] [Bug 3023] New: PAML/Codeml wrapper seems broken with PAML4.4   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3023] PAML/Codeml wrapper seems broken with PAML4.4   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3023] PAML/Codeml wrapper seems broken with PAML4.4   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3023] PAML/Codeml wrapper seems broken with PAML4.4   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3023] PAML/Codeml wrapper seems broken with PAML4.4   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [16913] bioperl-dev/branches: Importing the initial version of the SearchIO based parser for HMMER v3. 0rc.   Thomas J. Sharpton
• [Bioperl-guts-l] [16913] bioperl-dev/branches: Importing the initial version of the SearchIO based parser for HMMER v3. 0rc.   Mark A. Jensen
• [Bioperl-guts-l] [Bug 3024] New: Nucleotide sequence strandedness getting lost in alignment/sequence outputs:   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3024] Nucleotide sequence strandedness getting lost in alignment/sequence outputs:   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3024] Nucleotide sequence strandedness getting lost in alignment/sequence outputs:   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3025] New: Infinite loop under certain conditions in Bio::SeqIO::embl   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3025] Infinite loop under certain conditions in Bio::SeqIO::embl   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [16914] bioperl-live/trunk/Bio/SeqIO/embl.pm: [bug 3025] patch fixing infinite loop (courtesy Adam Sj?\195?\184gren)   Christopher John Fields
• [Bioperl-guts-l] [Bug 3025] Infinite loop under certain conditions in Bio::SeqIO::embl   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3017] use threads to get genbank file error   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [16915] bioperl-live/trunk: [bug 3020] add a --noalias-target option for loading (patch courtesy Nathan Weeks)   Christopher John Fields
• [Bioperl-guts-l] [Bug 3020] GFF3Loader.pm: allow disabling creation of Alias attribute for target_id of Target attribute (patches included)   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3024] Nucleotide sequence strandedness getting lost in alignment/sequence outputs:   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [16916] bioperl-live/trunk/Bio/FeatureIO.pm: remove 'officially sanctioned' hoo rah from module, replace it with a warning indicating it' s current state   Christopher John Fields
• [Bioperl-guts-l] [16917] bioperl-live/trunk/Bio/FeatureIO.pm: speling   Christopher John Fields
• [Bioperl-guts-l] [16918] bioperl-dev/trunk/Bio/Root/: remove redundant Root modules ( these shuld be using whatever is in @INC   Christopher John Fields
• [Bioperl-guts-l] [16919] bioperl-live/trunk: optionally allow a PerlIO::eol layer, which normalizes line endings on both input and output ( this is off by default, see RootIO.t for tests).   Christopher John Fields
• [Bioperl-guts-l] [16920] bioperl-live/trunk/t/data: add RootIO.t test cases   Christopher John Fields
• [Bioperl-guts-l] [Bug 2977] TreeIO problems   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2977] TreeIO problems   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2977] TreeIO problems   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2977] TreeIO problems   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2977] TreeIO problems   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2977] TreeIO problems   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2977] TreeIO problems   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2977] TreeIO problems   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2977] TreeIO problems   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3023] PAML/Codeml wrapper seems broken with PAML4.4   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3023] PAML/Codeml wrapper seems broken with PAML4.4   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3023] PAML/Codeml wrapper seems broken with PAML4.4   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [16921] Bio-FeatureIO/trunk/lib/Bio/FeatureIO: removed unnecessary use of Bio:: OntologyIO from interpro and bed FeatureIO drivers   Robert Buels
• [Bioperl-guts-l] [16922] bioperl-run/trunk/lib/Bio/Tools/Run/StandAloneBlastPlus.pm: fix _fastize changing sequence alphabet upon gap-stripping   Mark Allen Jensen
• [Bioperl-guts-l] [Bug 3023] PAML/Codeml wrapper seems broken with PAML4.4   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3023] PAML/Codeml wrapper seems broken with PAML4.4   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3023] PAML/Codeml wrapper seems broken with PAML4.4   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3023] PAML/Codeml wrapper seems broken with PAML4.4   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3023] PAML/Codeml wrapper seems broken with PAML4.4   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [16923] bioperl-live/trunk/Bio/SeqFeature/Tools/TypeMapper.pm: fixed case change for Bio::SeqFeature::Tools::TypeMapper::FT_SO_map()   Nathan Liles
• [Bioperl-guts-l] [Bug 3027] New: Bio::SearchIO crashes with PSI-BLAST "no hits found" after the first round   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3027] Bio::SearchIO crashes with PSI-BLAST "no hits found" after the first round   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3028] New: Bio::TreeIO::nexus Fails to correctly output FigTree Formatting tags   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2594] Bio::Species memory leak   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3030] New: AlignIO::fasta should not flush sequences to alignment   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3031] New: Unable to parse algorithm_reference from BLAST reports using Bio::SearchIO   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3031] Unable to parse algorithm_reference from BLAST reports using Bio::SearchIO   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3031] Unable to parse algorithm_reference from BLAST reports using Bio::SearchIO   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3030] AlignIO::fasta should not flush sequences to alignment   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3032] New: Fgenesh errors   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3030] AlignIO::fasta should not flush sequences to alignment   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3030] AlignIO::fasta should not flush sequences to alignment   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3030] AlignIO::fasta should not flush sequences to alignment   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [16924] bioperl-live/trunk/Bio/Tools/Fgenesh.pm: bug #3032 - no whitespace between Gene: and number   Jason Stajich
• [Bioperl-guts-l] [Bug 3032] Fgenesh errors   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3032] Fgenesh errors   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [16925] bioperl-live/trunk/Bio/Seq: add some links to relevant module for docs   Christopher John Fields
• [Bioperl-guts-l] [16926] bioperl-live/trunk/Bio/Seq/RichSeqI.pm: more linky fixes   Christopher John Fields
• [Bioperl-guts-l] [Bug 3033] New: PrimarySeq   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [16927] bioperl-live/trunk/Bio/PrimarySeq.pm: idea of bernd: set id first, then seq, so seq errors can use the id   Mark Allen Jensen
• [Bioperl-guts-l] [Bug 3033] PrimarySeq   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3034] New: AlignIO::clustal writer; space missing before version number   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [16928] bioperl-live/trunk/Bio/AlignIO/clustalw.pm: Fix for bug #3034, courtesy of Bernd.   Dave Messina
• [Bioperl-guts-l] [Bug 3034] AlignIO::clustal writer; space missing before version number   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [16929] bioperl-live/trunk/scripts/Bio-DB-GFF/genbank2gff3.PLS: commented out map_types() method in genbank2gff3 converter script due to type mapping bugs   Nathan Liles
• [Bioperl-guts-l] [16930] bioperl-live/trunk/Bio/SeqFeature/Tools/TypeMapper.pm: Fixed rna capitalization errors in Bio::SeqFeature::Tools::TypeMapper:: FT_SO_map() and re-added pseudoCDS typemap   Nathan Liles
• [Bioperl-guts-l] [16931] bioperl-live/trunk/Bio/SeqFeature/Tools/TypeMapper.pm: re-added misc_feature type to Bio::SeqFeature::Tools::TypeMapper:: FT_SO_map()   Nathan Liles
• [Bioperl-guts-l] [Bug 3033] PrimarySeq   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3028] Bio::TreeIO::nexus Fails to correctly output FigTree Formatting tags   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3028] Bio::TreeIO::nexus Fails to correctly output FigTree Formatting tags   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3028] Bio::TreeIO::nexus Fails to correctly output FigTree Formatting tags   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3028] Bio::TreeIO::nexus Fails to correctly output FigTree Formatting tags   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3028] Bio::TreeIO::nexus Fails to correctly output FigTree Formatting tags   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [16932] bioperl-live/trunk: Changed phase in Bio::Tools::GFF:: _gff3_string to default to 1.   Nathan Liles
• [Bioperl-guts-l] [16932] bioperl-live/trunk: Changed phase in Bio::Tools::GFF:: _gff3_string to default to 1.   Aaron Mackey
• [Bioperl-guts-l] [16932] bioperl-live/trunk: Changed phase in Bio::Tools::GFF:: _gff3_string to default to 1.   Chris Fields
• [Bioperl-guts-l] [16933] bioperl-live/trunk/Bio/SeqFeature/Tools/Unflattener.pm: fixed noinfer to properly remove inferred mRNAs without also stripping CDS   Nathan Liles
• [Bioperl-guts-l] [Bug 2399] BlastHSP::n gives empty values   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2399] BlastHSP::n gives empty values   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [16934] bioperl-live/trunk/Bio/PrimarySeq.pm: handle possible undefined id in warning msgs   Mark Allen Jensen
• [Bioperl-guts-l] [Bug 3033] PrimarySeq   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [16936] Bio-FeatureIO/trunk/lib/Bio/FeatureIO/gff.pm: get sequence parsing working   Christopher John Fields
• [Bioperl-guts-l] [16937] Bio-FeatureIO/trunk/lib/Bio/FeatureIO: use interface, not implementation   Christopher John Fields
• [Bioperl-guts-l] [16938] Bio-FeatureIO/trunk: simple feature groups implemented, but this should delegate to a database iterator   Christopher John Fields
• [Bioperl-guts-l] [16939] Bio-FeatureIO/trunk: how about actually testing the features themselves, instead of just relying on whether it exists or not   Christopher John Fields
• [Bioperl-guts-l] [16940] Bio-FeatureIO/trunk: get iterative feature groups working along with sequence stream   Christopher John Fields
• [Bioperl-guts-l] [16941] Bio-FeatureIO/trunk/lib/Bio: forgot to add event interface for simple event generation   Christopher John Fields
• [Bioperl-guts-l] [16942] bioperl-run/trunk/lib/Bio/Tools/Run/Phylo/PAML/Evolver.pm: Some extra variables were on the left side of the _rearrange, causing improper assignment of parameters.   Dave Messina
• [Bioperl-guts-l] [16943] bioperl-live/trunk/Bio/DB/SeqFeature/Store/DBI/Pg.pm: performance enhancements suggested by Randall Svancara.   Scott Cain

Last message date: Wed Mar 31 16:34:05 EDT 2010
Archived on: Wed Mar 31 16:34:09 EDT 2010

• Messages sorted by: [ thread ] [ subject ] [ author ]
• More info on this list...