[Bioperl-guts-l] [Bug 3163] AssemblyIO takes too long (especially 454)

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Tue Jan 11 11:57:40 EST 2011


http://bugzilla.open-bio.org/show_bug.cgi?id=3163





------- Comment #11 from cjfields at bioperl.org  2011-01-11 11:57 EST -------
(In reply to comment #10)
> Thanks Florent.  I am curious what makes it go so slow, and now I know it's
> exponentially slow with increasing reads!

Almost sounds like an issue of prior results not being cached/memoized
somewhere important.


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