[Bioperl-guts-l] [bioperl/bioperl-live] d0c366: Add pretty_print method for Bio::SimpleAlign

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Branch: refs/heads/topic/tree_api_refresh
Home:   https://github.com/bioperl/bioperl-live

Commit: d0c3661a0feee134e1c9554ae525354761c7244c
    https://github.com/bioperl/bioperl-live/commit/d0c3661a0feee134e1c9554ae525354761c7244c
Author: gjuggler <greg at ebi.ac.uk>
Date:   2011-03-07 (Mon, 07 Mar 2011)

Changed paths:
  M Bio/SimpleAlign.pm

Log Message:
-----------
Add pretty_print method for Bio::SimpleAlign


Commit: 7bcb1e8ccfa31766082721d98bfcf0beb9388c2b
    https://github.com/bioperl/bioperl-live/commit/7bcb1e8ccfa31766082721d98bfcf0beb9388c2b
Author: gjuggler <greg at ebi.ac.uk>
Date:   2011-03-07 (Mon, 07 Mar 2011)

Changed paths:
  M Bio/DB/Taxonomy.pm
  M Bio/Tree/NodeFunctionsI.pm
  M Bio/Tree/TreeFunctionsI.pm
  M Bio/TreeIO/newick.pm

Log Message:
-----------
Small changes to API


Commit: e6d544dbe30af762bc5c3014fdaba68e77c2dce2
    https://github.com/bioperl/bioperl-live/commit/e6d544dbe30af762bc5c3014fdaba68e77c2dce2
Author: gjuggler <greg at ebi.ac.uk>
Date:   2011-03-07 (Mon, 07 Mar 2011)

Changed paths:
  M Bio/Tree/Node.pm
  M Bio/Tree/NodeFunctionsI.pm
  M Bio/Tree/TreeFunctionsI.pm
  A scripts/tree/tree_howto.pl
  M t/data/tree_parse_stress.txt

Log Message:
-----------
Fix merge conflicts.


Commit: a1f9f43fcc72c93df7d295746298d1fae965eb98
    https://github.com/bioperl/bioperl-live/commit/a1f9f43fcc72c93df7d295746298d1fae965eb98
Author: gjuggler <greg at ebi.ac.uk>
Date:   2011-03-07 (Mon, 07 Mar 2011)

Changed paths:
  M Bio/Tree/Node.pm

Log Message:
-----------
Avoid using Root::Clone for Node's clone method.


Compare: https://github.com/bioperl/bioperl-live/compare/96dd62c...a1f9f43