[Bioperl-guts-l] [BioPerl - Feature #1891] Implement a seqgen wrapper in bioperl-run

redmine at redmine.open-bio.org redmine at redmine.open-bio.org
Tue Mar 15 13:20:08 EDT 2011


Issue #1891 has been updated by Chris Fields.

Tracker changed from Bug to Feature


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Feature #1891: Implement a seqgen wrapper in bioperl-run
http://redmine.open-bio.org/issues/1891

Author: Albert Vilella
Status: New
Priority: Low
Assignee: Bioperl Guts
Category: bioperl-run
Target version: unspecified
URL: 


http://evolve.zoo.ox.ac.uk/software.html?id=seqgen

(1) Should call seqgen with the basics

(2) Should ease the way of a codon rates/usage from a
Bio::Tools::Phylo::PAML codonusage to a seqgen <CODON_POSITION_RATES>
string.

(I'll try to find time for this by 200512-200601)


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