[Bioperl-guts-l] [BioPerl - Bug #3165] Bio::Index::Fastq indexing not in sync with FASTQ spec

redmine at redmine.open-bio.org redmine at redmine.open-bio.org
Sun Mar 27 18:05:15 EDT 2011


Issue #3165 has been updated by Jason Stajich.

Assignee set to Chris Fields


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Bug #3165: Bio::Index::Fastq indexing not in sync with FASTQ spec
http://redmine.open-bio.org/issues/3165

Author: Chris Fields
Status: New
Priority: Normal
Assignee: Chris Fields
Category: Core Components
Target version: main-trunk
URL: 


FASTQ no longer requires the description line for the quality string, per the recent open-bio FASTQ specification paper.  However, FASTQ indexing via Bio::Index::Fastq still requires it.  The indexer needs to be brought in line with the spec and Bio::SeqIO::fastq.

Per mail-list:

http://bioperl.org/pipermail/bioperl-l/2010-December/034369.html


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