[Bioperl-guts-l] [BioPerl - Bug #3165] Bio::Index::Fastq indexing not in sync with FASTQ spec

redmine at redmine.open-bio.org redmine at redmine.open-bio.org
Sun Mar 27 18:05:15 EDT 2011

Issue #3165 has been updated by Jason Stajich.

Assignee set to Chris Fields

Bug #3165: Bio::Index::Fastq indexing not in sync with FASTQ spec

Author: Chris Fields
Status: New
Priority: Normal
Assignee: Chris Fields
Category: Core Components
Target version: main-trunk

FASTQ no longer requires the description line for the quality string, per the recent open-bio FASTQ specification paper.  However, FASTQ indexing via Bio::Index::Fastq still requires it.  The indexer needs to be brought in line with the spec and Bio::SeqIO::fastq.

Per mail-list:


You have received this notification because you have either subscribed to it, or are involved in it.
To change your notification preferences, please click here and login: http://redmine.open-bio.org

More information about the Bioperl-guts-l mailing list