[Bioperl-guts-l] [BioPerl - Bug #2985] ProtPars.t passing but with lots of warnings

redmine at redmine.open-bio.org redmine at redmine.open-bio.org
Sun Mar 27 19:15:20 EDT 2011


Issue #2985 has been updated by Jason Stajich.


Checked in a few changes but this still needs work as the TreeIO parsing fails when there is the trailing [SCORE] in the ProtPars tree result.
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Bug #2985: ProtPars.t passing but with lots of warnings
http://redmine.open-bio.org/issues/2985

Author: Adam Witney
Status: New
Priority: Normal
Assignee: Bioperl Guts
Category: Unclassified
Target version: main-trunk
URL: 


version in trunk was passing but with lots of these warnings:

Use of uninitialized value in string comparison (cmp) at t/ProtPars.t line 81

due to presence of internal nodes with no id's

attached patch fixes this... although I am not experienced enough in this code to know if it is correct.


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