[Bioperl-guts-l] [bioperl/bioperl-live] 890552: Add VCF guesser. Example vcf format for testing - ...

noreply at github.com noreply at github.com
Wed Mar 30 05:17:56 EDT 2011


Branch: refs/heads/master
Home:   https://github.com/bioperl/bioperl-live

Commit: 89055271db8e50f6b36a38951e70e6612adf21ae
    https://github.com/bioperl/bioperl-live/commit/89055271db8e50f6b36a38951e70e6612adf21ae
Author: kortschak <kortschak at sueno>
Date:   2011-03-29 (Tue, 29 Mar 2011)

Changed paths:
  M Bio/Tools/GuessSeqFormat.pm
  A t/data/example.vcf

Log Message:
-----------
Add VCF guesser. Example vcf format for testing - provided from http://www.1000genomes.org/wiki/analysis/vcf4.0 with modification according to definition (spaces -> \t).


Commit: b8cd8ed3f0c9cb7366626b9d5957afc7e19d9fbf
    https://github.com/bioperl/bioperl-live/commit/b8cd8ed3f0c9cb7366626b9d5957afc7e19d9fbf
Author: kortschak <kortschak at zoidberg.mbs.adelaide.edu.au>
Date:   2011-03-30 (Wed, 30 Mar 2011)

Changed paths:
  A t/Tools/GuessSeqFormat.t

Log Message:
-----------
GuessSeqFormat tests - build it and they will come.


Commit: 62e237142d2f02006efb8fc87885dd8aea2a79e4
    https://github.com/bioperl/bioperl-live/commit/62e237142d2f02006efb8fc87885dd8aea2a79e4
Author: DaveMessina <online at davemessina.com>
Date:   2011-03-30 (Wed, 30 Mar 2011)

Changed paths:
  M Bio/Tools/GuessSeqFormat.pm
  A t/data/example.vcf

Log Message:
-----------
Merge commit '8905527'


Commit: 69a904bec69a78ece9cb7340304c7f4a38e7ae05
    https://github.com/bioperl/bioperl-live/commit/69a904bec69a78ece9cb7340304c7f4a38e7ae05
Author: DaveMessina <online at davemessina.com>
Date:   2011-03-30 (Wed, 30 Mar 2011)

Changed paths:
  A t/Tools/GuessSeqFormat.t

Log Message:
-----------
Merge commit 'b8cd8ed'


Compare: https://github.com/bioperl/bioperl-live/compare/c148ee0...69a904b


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