Bioperl: Stymied by Bio::Tools::Blast

Lincoln Stein
Tue, 25 Aug 1998 14:09:32 -0400

My very first large project with Bio::Tools::Blast and I'm stymied by
a silly problem:

When I retrieve the list of HSPs for a hit, how do I tell whether
I'm dealing with a plus or a minus strand HSP?  The range() operator
always sorts the endpoints of the subject and query sequences from
lower to higher!


Lincoln D. Stein                           Cold Spring Harbor Laboratory			                  Cold Spring Harbor, NY
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