Bioperl: Reading from a stream into Bio::Seq
Gordon D. Pusch
Tue, 27 Oct 1998 10:27:15 -0600
> If this is a general problem, I'd recommend that we work on an XML or
> Boulder-like syntax for serializing Bio::* objects.
As as outcome of the recent Argonne/KEGG Workshop, we have been working
on an XML-compliant metafile format for interchange of genome data.
We hope to be posting a draft on our website within a week, and will
also be submitting it for publication.
> An easy, but Perl-specific, alternative is simply to use the Perl
> Data::Dumper serialization class.
I would be opposed to this hack precisely because it is perl specific,
and therefore restricts portability...
Gordon D. Pusch, | Internet: <firstname.lastname@example.org>
Ph.D., Consultant |
Disclaimer: I'm a consultant collaborating with Argonne researchers;
I don't speak for ANL or the DOE --- and they *certainly* don't speak
for =ME= !!!
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