Bioperl: Help with blast and vector trimming

Steve Chervitz (Steve A. Chervitz)
Tue, 2 Feb 1999 14:10:40 -0800 (PST)

Jonathan Epstein writes:
 > I'm trying to use the bioPerl blast functionality, initially for trimming
 > vector from some EST's.
 > When I run the sample:
 >   perl ./ seq/seqs.fasta -eid -prog blastp -db yeast -signif
 > 1e-5 -table 2 >runseqs.out
 > I encounter the following error, even though the named file exists.
 >   UX:sh (sh): ERROR:
 > /disk3/people/epstein/perl/lib/site_perl/Bio/Tools/Blast/Run/
 > Not found
 > No Blast results saved.

Try changing the #! line of to /usr/bin/perl instead of
/usr/local/bin/perl (if your perl executable is not reachable via


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