Bioperl: Parsing GenBank reports from NCBI.
Sat, 23 Oct 1999 13:35:38 -0400 (EDT)
The BoulderIO modules can fetch and parse the detailed GenBank
records, along with Unigene, OMIM, Medline, SwissProt, BLAST and a few
others. I am releasing a new version of this in a few days, but the
older version is available at http://stein.cshl.org/
Kutbuddin Doctor writes:
> I have used Bio::DB::GenPept to retrieve and parse FASTA records from
> NCBI. Are there other modules available (currently) that do the same for
> the more detailed "GenBank" report?
> I have corresponded with the author of the Bio::DB::GenPept who says such
> a module will probably released with the new Bio::Seq module. I have no
> idea when that will come about - so I though that maybe someone has thier
> own solution.
> I would also be interested in code if anyone is willing to share thier
> invention of this "wheel". I actually need the code for protein queries
> rather than DNA.
> Kutbuddin S. Doctor, PhD
> Burnham Institute,
> 10901 N. Torrey Pines Rd.,
> La Jolla, CA 92037
> Ph: (858) 646-3100 ext 3488
> (858) 550-0786 (H)
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Lincoln D. Stein Cold Spring Harbor Laboratory
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