FW: [Bioperl-l] Fwd: [Biojava-l] new NCBI blast outputs XML
Fri, 11 Aug 2000 16:56:14 -0700 (PDT)
I'm really excited to have XML output for Blast. It should make things a
lot easier to parse!
From your blstxml.dtd,
Karlin-Altschul parameter H
<!ELEMENT Statistics_enthropy ( %REAL; )>
Should this be Statistics_entropy?
On Fri, 11 Aug 2000, Sergei Shavirin wrote:
> Here are ASN.1 and DTD specs and example of simple XML output.
> Please let me know if you need more information.
> >From: Andrew Dalke [mailto:email@example.com]
> >Sent: Friday, August 11, 2000 3:57 PM
> >To: firstname.lastname@example.org
> >Cc: Geer, Lewis (NLM)
> >Subject: Re: [Bioperl-l] Fwd: [Biojava-l] new NCBI blast outputs XML
> >Lewis Geer said:
> >>The standalone blast server (available on the our ftp site) now has XML
> >>output, thanks to Sergei Shavirin. He said he'll try to add it to blastall
> >>before he leaves for vacation today. Eventually, XML should be available
> >>from our public BLAST web pages, too.
> >Any chance an example output file can be put somewhere? I would like to
> >see what it looks like. I'm working on a parser project for biopython
> >and want to make sure I'm using consistent names for the same data items.
> > Andrew
> > email@example.com
> >Bioperl-l mailing list
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