[Bioperl-l] proposal Bio::SeqIO::largefasta

Jason Stajich jason@chg.mc.duke.edu
Mon, 4 Dec 2000 11:32:10 -0500 (EST)

I have written a simple SeqIO adaptor for reading in a large sequence 
in fasta format (ie Jim Kent's golden path representation of a
chromosome).  This uses Ewan's more memory efficient
Bio::Seq::LargePrimarySeq implementation for large > 100 MB seqs.
Assumingly those using this module had their own ways of pushing sequence
into this object, hopefully this implementation will be useful.  

Before I check it in, this okay to commit as part of 0.7?

Jason Stajich
Center for Human Genetics
Duke University Medical Center