[Bioperl-l] Bio::PrimarySeq _guess_type
Tue, 5 Dec 2000 10:00:29 +0000 (GMT)
On Mon, 4 Dec 2000, Jason Stajich wrote:
> This is mostly for Ewan -
> In the _guess_type method where one is trying to guess whether it
> is RNA, DNA, or PROTEIN sequence - one calculates percentage
> of ACGT and ACGT+U and compares to see if they are > 85%
> The line to remove all U's from the seq is written as
> $str2 =~ s/Uu//g;
> Should it not be written as
> $str2 =~ s/[Uu]//g;
> I can fix it, just wanted to be sure.
yes. did you have to put this one out the general mailing list?