Sun, 16 Jul 2000 12:21:35 +0000 (GMT)
On Sat, 15 Jul 2000, Lorenz Pollak wrote:
> > There is a massive advantage here, as alot of the systems in
> Nice to hear! :-)
> > Bio::Seq/Bio::SeqIO rely on things inherieting from Bio::SeqFeatureI - you
> > should also set primary_tag and source_tag to sensible values.
> for the query feature:
> primary_tag = "blast_query"
> source_tag = $report->query (ac, id or name supplied with the query)
> for the sbjct feature:
> primary_tag = "blast_sbjct"
> source = $sbjct->name (ac, id, name of sbjct)
No. This are too specific. The $report->query should go in the seqname
field and the $sbjct->name into the seqname field of the hit on the other
For both features it should be
primary_tag - similarity
source_tag - BLAST
> how about these?
> > Have you added a BPLite specific test?
> I will do that in the next days.
> (along with adding docs and some minor
> enhancements like using hashed constructors
> in all three modules)
> kind regards,