[Bioperl-l] Bio::SeqIO::swiss

L.Pollak lorenz@ist.org
Fri, 28 Jul 2000 20:41:37 +0200

Hi to everyone!

while i was implementing save functions for this protein control panel 
thingy i discovered that the write abilities of Bio::SeqIO::swiss are 
rather unfinished... (it can't write features for instance)

so i'll do some work on this, ok?


PS: the current progress of my program may be of interest:

+ read one swissprot sequence from file
+ retrieve sequence from db/flat file indexes
  (genpept is already working, others need
   saved settings for paths and other stuff)
+ save sequence to swissprot file (same/other)
+ show seq stats
+ edit description
+ edit/add/del comments
+ edit/add/del dblinks
+ edit/add/del references

working on:
* edit/add/del features (with subfeatures)
* improvement of swissprot output

not started:
- the whole blast / hmmer stuff
- edit sequence so that features and other things that have 
  start/end values remain consistent