[Bioperl-l] some checkins
Mon, 31 Jul 2000 17:37:31 -0400 (EDT)
- There was a little bug in SeqIO::swiss - were redeclaring $acc again.
Please run make test before committing to be sure you are not breaking
the build if at all possible. The really sane thing here is to check
out a new versino of the code in a second dir and make sure it still
makes with no errors.
- There were some typos in the Docs of SeqFeatureI and DB::RandomAccessI
[cvs update -d to get the new directory ]
- added Bio::SeqFeatureProducerI, and one implementing class
Bio::SeqFeatureProducer::GFF which just uses the SeqFeature::Generic GFF
parsing to add features to a sequence. The design might need some more
discussion, only two functions add_features, and _parse_rpt, but at least
is a start.
- added a test for it in t/SeqFeatureProducer.t and a .fasta and .gff
file for this.
Comments are always welcome. Himlar if we can make a BLAST
FeatureProducer the same way we'd have a nice way of adding features to
sequences. More feature producing report parsing can be added in this way
Center for Human Genetics - Duke University Medical Center