[Bioperl-l] protein identification program for proteomics

Leonardo Marino-Ramirez marino@tofu.tamu.edu
Thu, 14 Sep 2000 07:03:56 -0500 (CDT)

Dear Tsvika,

We have started an effort to develop an algorithm to identify proteins
from tryptic fragments.

The whole thing was written in PERL. However, it needs a lot more work.
You can test drive it with monoisotopic masses from E. coli proteins
(that is the only db available).

Regards, Leonardo

On Thu, 14 Sep 2000, Tsvika wrote:

> Hi all,
> I am looking for a stand alone protein identification program for
> proteomics written in Perl to run on my Linux box.  This program will
> identify proteins based on their molecular weight, and their N-terminal,
> or C-terminal sequence (a short one that you get from micro sequencing).
> The program will search flat files of amino acids sequences from the
> generic databases.
> Please your help or advise?
> Thanks in advance,
> Tsvika.