[Bioperl-l] ESTScan parser

Hilmar Lapp hlapp@gmx.net
Mon, 18 Sep 2000 14:35:29 +0200

I committed the initial version of the ESTScan parser to
Bio/Tools/ESTScan.pm. It follows the SeqAnalysisParser principle and
inherits off Tools::AnalysisResult.

Returned objects are Bio::Tools::Prediction::Gene objects holding
predicted exons (Bio::Tools::Prediction::Exon).

Initial tests pass for forward ORF predictions, for reverse strand
predictions there is still a problem with getting the coordinates right.

Hilmar Lapp                                email: hlapp@gmx.net
NFI Vienna, IFD/Bioinformatics             phone: +43 1 86634 631
A-1235 Vienna                                fax: +43 1 86634 727