[Bioperl-l] GFF method in Bio::SeqFeatureI
Tue, 20 Feb 2001 12:32:28 -0500 (EST)
On Tue, 20 Feb 2001, Matthew Pocock wrote:
> >> <heresy>Could you not produce a GFF module that looks very similar to
> >> the SeqIO stuff that consumes text and is a factory for features? It can
> >> also have the methods for producing GFF. GFF is a file format, and is in
> >> no way integral to SeqFeatureI.</heresy>
> > Sounds great! When do we expect code matthew?
> Checked in Bio::Tools::GFF that implements Bio::SeqAnalysisParserI and
> has the method write_feature. It is un-documented, and the GFF2 parser
> can't parse the GFF2 output it generates. I just coppied code from
> Generic & SeqFeatureI. I think the t/GFF.t needs completely re-writing
> to be a propper test-harness program.
> Somebody take this off my hands before nasty things happen!
I've updated the tests to do a better job testing.
Added a close() method to Bio::Tools::GFF.
> >> Matthew
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