[Bioperl-l] GFF method in Bio::SeqFeatureI
Tue, 20 Feb 2001 17:52:32 +0000
> I doubt, however, that this was the problem you were describing in your
> message since it is a rare event... Unfortunately, I was not able to see any
> other errors in the reading/writing of GFF2. Can you send me an explicit
> example of what is going wrong when you use it so that I can see the bug for
I was using the original t/GFF.t which printed GFF/GFF2 to stdout and
read it from stdin. To make this work, I was pasting the output back to
the terminal. Horible hack, I know. The GFF parser accepted the GFF
output, but the GFF2 parser said that it wasn't a GFF2 string.
Hope that helps.