[Bioperl-l] SeqFeature::Generic 'frame' method

Hilmar Lapp lapp@gnf.org
Mon, 26 Feb 2001 18:43:28 -0800

Jason Stajich wrote:
> Technically if the frame 'strand' always matches the query strand
> (currently comes from checking order of the query match -- reverse order
> means strand = -1) then discarding the sign of the frame won't cause an
> error since strand is already set.  Just to be correct I can add code that
> will extract and set strand information expicitly when 'frame' is called.

I see. What if we ->warn() when they disagree?

Hilmar Lapp                            email: lapp@gnf.org
GNF, San Diego, Ca. 92121              phone: +1-858-812-1757