[Bioperl-l] Map Manipulation and Genetic Analysis
Tue, 16 Jan 2001 20:43:48 -0600
Hello BioPerl Folks,
I was thumbing through the BioPerl modules list and noticed that there was not any coverage in the area of processing (non-sequence) maps and genetic data. I am working on some programs for processing physical and genetic maps, as well as genotypic and phenotypic data. I was wondering, is there any interest in these areas in the BioPerl community or, have I overlooked previous work on these things?
I know of some of the stuff that Lincoln Stein has done (on ACEDB, RH mapping, etc.) but I have not seen anything in the form of reusable software components for basic map manipulation, comparison, etc. Nor am I aware of modules for manipulating raw data for genetic analysis. I am fairly new to working with genetic data. I would be interested in hearing of leads in this area. However, if it is not already done, I would be willing to write it in the context of BioPerl.
Eric E. Snyder
Pennington Biomedical Research Center
6400 Perkins Road
Baton Rouge, LA 70808-4124
Phone: (225) 763-3185
Fax: (225) 763-2525
Cell: (225) 235-6271
ICBM: N 30 24'14.0", W 91 07'20.0"