[Bioperl-l] Pairwise seq. comarison

henrik nilsson rnilsson at clarku.edu
Fri Apr 2 15:42:13 EST 2004


For two aligned (and obviously overlapping) sequences, can I use Bioperl to 
retrieve the number of differing sites in the alignment (for the overlapping 
region only, excluding the flanking regions where only one of the two 
sequences is present)?



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