[Bioperl-l] Parsing Blast HIT data

Brian Osborne brian_osborne at cognia.com
Thu Apr 8 20:33:14 EDT 2004


Check out the SearchIO HOWTO. You should also look at the FAQ, there's a
question there about parsing BLAST reports in HTML

Brian O.

-----Original Message-----
From: bioperl-l-bounces at portal.open-bio.org
[mailto:bioperl-l-bounces at portal.open-bio.org]On Behalf Of Desmond LIM
Sent: Wednesday, April 07, 2004 3:14 AM
To: bioperl-l at bioperl.org
Subject: [Bioperl-l] Parsing Blast HIT data


I've been going through the Bio::SearchIO module's documentation but
still have no idea on how to use it.

I need to parse some Blast HIT webpages that I have. Can anyone give me
an example on how to get the items I need or point me to some
comprehensive documentation?



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