[Bioperl-l] distances from one atom to another in biological structures

Michael E Bradley mebradley at chem.ufl.edu
Mon Apr 12 12:09:26 EDT 2004

I would like to have a script that takes as input a list of protein
sites, a PDB file of that protein, and an atom in, say, the active site
region of the protein. The objective is to calculate distances between
the specified protein sites and the active site atom using the
coordinates in the PDB file. Does anyone know of an existing script like
Michael E. Bradley, Ph.D.
Postdoctoral Fellow
University of Florida

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