[Bioperl-l] tiling hits to multiple alignment

Babenko, Vladimir (NIH/NLM/NCBI) babenko at ncbi.nlm.nih.gov
Thu Apr 15 10:37:52 EDT 2004

    I wonder if there is any optimal way/template to arrange the blast hits
separately along the query in a form of multiple alignment?

I have no problems in pairwise AlignIO object creation from blast output,
thanks to SearchIO, but as for the whole hit set I have no clear idea.

   Could there be some “natural” way to do that?



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